Natrarchaeobaculum sulfurireducens

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrarchaeobaculum

Average proteome isoelectric point is 4.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3734 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346PQM8|A0A346PQM8_9EURY Uncharacterized protein OS=Natrarchaeobaculum sulfurireducens OX=2044521 GN=AArcMg_1816 PE=4 SV=1
MM1 pKa = 7.49SDD3 pKa = 2.89EE4 pKa = 3.86RR5 pKa = 11.84RR6 pKa = 11.84YY7 pKa = 10.53ASRR10 pKa = 11.84RR11 pKa = 11.84KK12 pKa = 9.74LLAATGSLTALGLAGCLGDD31 pKa = 4.26EE32 pKa = 4.89EE33 pKa = 5.75GDD35 pKa = 3.81EE36 pKa = 4.82PEE38 pKa = 4.78PADD41 pKa = 5.94DD42 pKa = 6.13GDD44 pKa = 5.37DD45 pKa = 3.98DD46 pKa = 6.42HH47 pKa = 9.36DD48 pKa = 6.87DD49 pKa = 4.85DD50 pKa = 6.27DD51 pKa = 5.85HH52 pKa = 9.08DD53 pKa = 5.79HH54 pKa = 7.79DD55 pKa = 6.51DD56 pKa = 5.3DD57 pKa = 5.59HH58 pKa = 8.97DD59 pKa = 5.46HH60 pKa = 7.78DD61 pKa = 6.31DD62 pKa = 4.16GVADD66 pKa = 4.58EE67 pKa = 5.24YY68 pKa = 11.4FDD70 pKa = 3.9EE71 pKa = 6.02LGVADD76 pKa = 4.72EE77 pKa = 5.14GFVILDD83 pKa = 3.68RR84 pKa = 11.84AHH86 pKa = 7.2DD87 pKa = 3.67PHH89 pKa = 8.28EE90 pKa = 4.33EE91 pKa = 3.7VAYY94 pKa = 9.99VHH96 pKa = 6.84GDD98 pKa = 2.82HH99 pKa = 6.46WHH101 pKa = 6.98GDD103 pKa = 3.65LPSIPVDD110 pKa = 3.7DD111 pKa = 4.34NVSIGAEE118 pKa = 3.89IEE120 pKa = 4.76LEE122 pKa = 4.58DD123 pKa = 5.02GDD125 pKa = 4.34EE126 pKa = 4.59LEE128 pKa = 5.96LGDD131 pKa = 4.14EE132 pKa = 4.48YY133 pKa = 11.14EE134 pKa = 4.39LRR136 pKa = 11.84VAVAPDD142 pKa = 3.46EE143 pKa = 4.52PEE145 pKa = 4.03GVVGIDD151 pKa = 3.04EE152 pKa = 4.89DD153 pKa = 5.36DD154 pKa = 3.46YY155 pKa = 11.78HH156 pKa = 7.73GDD158 pKa = 3.29HH159 pKa = 5.82VHH161 pKa = 6.09IHH163 pKa = 6.36GEE165 pKa = 4.1QEE167 pKa = 4.12GVTEE171 pKa = 4.25VVFMIWHH178 pKa = 7.56DD179 pKa = 3.72DD180 pKa = 3.48HH181 pKa = 9.02ADD183 pKa = 3.67YY184 pKa = 10.87QSPPITAQVVEE195 pKa = 4.56EE196 pKa = 5.19DD197 pKa = 4.31DD198 pKa = 5.52DD199 pKa = 5.14HH200 pKa = 8.92DD201 pKa = 4.84HH202 pKa = 7.4DD203 pKa = 6.05HH204 pKa = 7.4DD205 pKa = 4.52DD206 pKa = 3.92EE207 pKa = 4.69YY208 pKa = 11.94VSEE211 pKa = 4.31FQLLDD216 pKa = 3.58RR217 pKa = 11.84AHH219 pKa = 7.27DD220 pKa = 3.57PHH222 pKa = 8.4EE223 pKa = 4.86EE224 pKa = 3.41ISYY227 pKa = 8.76VHH229 pKa = 6.82GDD231 pKa = 3.02HH232 pKa = 6.56WHH234 pKa = 6.74GEE236 pKa = 4.14DD237 pKa = 4.97DD238 pKa = 4.5FPTIPVGDD246 pKa = 3.86NVSIGAEE253 pKa = 4.08LEE255 pKa = 4.24DD256 pKa = 4.31ADD258 pKa = 4.49GDD260 pKa = 4.4EE261 pKa = 4.53IVLGPEE267 pKa = 3.85YY268 pKa = 10.65EE269 pKa = 4.43LGVEE273 pKa = 4.14LADD276 pKa = 3.96GAEE279 pKa = 4.08EE280 pKa = 4.42GVVEE284 pKa = 4.13IDD286 pKa = 3.85EE287 pKa = 5.15DD288 pKa = 3.85EE289 pKa = 5.44DD290 pKa = 3.89YY291 pKa = 11.42HH292 pKa = 8.16GDD294 pKa = 3.4HH295 pKa = 5.84VHH297 pKa = 6.05IHH299 pKa = 6.3GEE301 pKa = 4.25SAGEE305 pKa = 4.15TEE307 pKa = 4.85VVFTLIHH314 pKa = 7.19DD315 pKa = 3.82DD316 pKa = 3.61HH317 pKa = 8.73VDD319 pKa = 3.59YY320 pKa = 7.47EE321 pKa = 4.89TPALTVTVGDD331 pKa = 4.27DD332 pKa = 3.05

Molecular weight: 36.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346PSJ3|A0A346PSJ3_9EURY Phage protein OS=Natrarchaeobaculum sulfurireducens OX=2044521 GN=AArc1_1230 PE=3 SV=1
MM1 pKa = 8.01PYY3 pKa = 10.03RR4 pKa = 11.84VALEE8 pKa = 3.88KK9 pKa = 10.89LVFDD13 pKa = 4.21RR14 pKa = 11.84FGRR17 pKa = 11.84PIVRR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84APVPDD28 pKa = 3.9TNSLIDD34 pKa = 3.38ASRR37 pKa = 11.84FLVRR41 pKa = 11.84VGSTDD46 pKa = 3.41EE47 pKa = 4.09PSEE50 pKa = 4.29PFDD53 pKa = 4.15SRR55 pKa = 11.84RR56 pKa = 11.84PTT58 pKa = 3.17

Molecular weight: 6.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3734

0

3734

1078029

44

2660

288.7

31.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.455 ± 0.053

0.766 ± 0.014

8.75 ± 0.057

9.244 ± 0.05

3.228 ± 0.027

8.137 ± 0.038

2.033 ± 0.02

4.385 ± 0.031

1.779 ± 0.026

8.93 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.729 ± 0.017

2.243 ± 0.021

4.557 ± 0.028

2.456 ± 0.02

6.42 ± 0.048

5.596 ± 0.033

6.491 ± 0.031

9.026 ± 0.042

1.112 ± 0.016

2.664 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski