Figwort mosaic virus (strain DxS) (FMV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus; Figwort mosaic virus

Average proteome isoelectric point is 7.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) OX=10650 GN=ORF V PE=3 SV=1
MM1 pKa = 7.69AATLSEE7 pKa = 3.98IRR9 pKa = 11.84EE10 pKa = 4.57LIQSLTKK17 pKa = 9.1TANEE21 pKa = 3.63IKK23 pKa = 10.86AMLEE27 pKa = 3.87RR28 pKa = 11.84NSAGKK33 pKa = 7.97PTGIEE38 pKa = 3.49EE39 pKa = 3.99AAAKK43 pKa = 9.74IIKK46 pKa = 10.17DD47 pKa = 3.19IGDD50 pKa = 4.54KK51 pKa = 10.12IDD53 pKa = 3.25QCEE56 pKa = 4.12CTKK59 pKa = 10.66KK60 pKa = 10.15IEE62 pKa = 4.05EE63 pKa = 4.46MLDD66 pKa = 3.09QKK68 pKa = 11.39QNADD72 pKa = 3.68TQIVPTKK79 pKa = 9.97QEE81 pKa = 3.59SSGLVKK87 pKa = 10.63YY88 pKa = 10.31SYY90 pKa = 10.68PNWNVGNEE98 pKa = 4.11EE99 pKa = 4.83LGSSGNPNAVKK110 pKa = 10.03WPPRR114 pKa = 11.84KK115 pKa = 9.78

Molecular weight: 12.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P09522|VAP_FMVD Virion-associated protein OS=Figwort mosaic virus (strain DxS) OX=10650 GN=ORF III PE=3 SV=1
MM1 pKa = 7.45SKK3 pKa = 10.6DD4 pKa = 3.5HH5 pKa = 7.39LDD7 pKa = 3.72FPHH10 pKa = 6.69VYY12 pKa = 10.19KK13 pKa = 10.75KK14 pKa = 11.0NKK16 pKa = 8.49VLKK19 pKa = 10.36LKK21 pKa = 10.49PLDD24 pKa = 3.56LSKK27 pKa = 11.15NPRR30 pKa = 11.84SYY32 pKa = 11.41YY33 pKa = 10.29FSSQNGSIQAIINHH47 pKa = 6.37CNNINQITARR57 pKa = 11.84NWLKK61 pKa = 10.52LSKK64 pKa = 10.0VLSYY68 pKa = 10.91FGLEE72 pKa = 4.18KK73 pKa = 10.33DD74 pKa = 3.66TSDD77 pKa = 4.95SISKK81 pKa = 10.35NKK83 pKa = 10.54SPFNRR88 pKa = 11.84FLKK91 pKa = 10.5DD92 pKa = 2.76ISHH95 pKa = 7.42IFRR98 pKa = 11.84EE99 pKa = 5.05GEE101 pKa = 4.01GSTKK105 pKa = 10.17KK106 pKa = 10.58ASEE109 pKa = 4.04LGEE112 pKa = 3.76ILEE115 pKa = 4.71KK116 pKa = 10.61IKK118 pKa = 11.12NLDD121 pKa = 3.71LKK123 pKa = 10.83IEE125 pKa = 4.2NLNKK129 pKa = 10.41RR130 pKa = 11.84IPDD133 pKa = 3.67NLVTKK138 pKa = 10.62ALIKK142 pKa = 10.56EE143 pKa = 4.12LVKK146 pKa = 11.18DD147 pKa = 3.63FDD149 pKa = 3.75EE150 pKa = 5.18RR151 pKa = 11.84LTEE154 pKa = 3.96VRR156 pKa = 11.84DD157 pKa = 4.37DD158 pKa = 3.39IKK160 pKa = 11.25KK161 pKa = 10.67VIGG164 pKa = 3.57

Molecular weight: 18.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2335

66

666

333.6

38.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.582 ± 0.581

1.799 ± 0.325

5.139 ± 0.333

8.522 ± 1.197

4.582 ± 0.55

4.026 ± 0.29

1.842 ± 0.438

7.709 ± 0.389

11.649 ± 0.665

8.822 ± 0.773

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.713 ± 0.356

5.31 ± 0.58

3.597 ± 0.428

4.582 ± 0.527

3.94 ± 0.188

8.394 ± 0.613

4.968 ± 0.53

4.668 ± 0.704

1.156 ± 0.214

2.998 ± 0.232
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski