Amino acid dipepetide frequency for Botryosphaeria dothidea victorivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
15.171AlaAla: 15.171 ± 4.389
2.528AlaCys: 2.528 ± 0.813
3.793AlaAsp: 3.793 ± 0.17
6.321AlaGlu: 6.321 ± 0.284
3.793AlaPhe: 3.793 ± 1.097
7.585AlaGly: 7.585 ± 4.048
5.057AlaHis: 5.057 ± 2.081
3.793AlaIle: 3.793 ± 2.61
2.528AlaLys: 2.528 ± 1.74
16.435AlaLeu: 16.435 ± 3.519
0.632AlaMet: 0.632 ± 0.435
2.528AlaAsn: 2.528 ± 1.04
6.953AlaPro: 6.953 ± 3.556
1.264AlaGln: 1.264 ± 0.057
3.793AlaArg: 3.793 ± 1.097
5.689AlaSer: 5.689 ± 0.208
5.689AlaThr: 5.689 ± 0.719
5.057AlaVal: 5.057 ± 1.154
1.896AlaTrp: 1.896 ± 0.378
3.161AlaTyr: 3.161 ± 2.175
0.0AlaXaa: 0.0 ± 0.0
Cys
1.896CysAla: 1.896 ± 1.305
0.0CysCys: 0.0 ± 0.0
3.161CysAsp: 3.161 ± 0.321
1.264CysGlu: 1.264 ± 0.87
1.264CysPhe: 1.264 ± 0.87
2.528CysGly: 2.528 ± 0.114
0.632CysHis: 0.632 ± 0.435
0.0CysIle: 0.0 ± 0.0
1.264CysLys: 1.264 ± 0.87
0.632CysLeu: 0.632 ± 0.492
0.0CysMet: 0.0 ± 0.0
0.632CysAsn: 0.632 ± 0.435
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.896CysArg: 1.896 ± 0.378
0.632CysSer: 0.632 ± 0.435
0.632CysThr: 0.632 ± 0.492
1.264CysVal: 1.264 ± 0.057
0.632CysTrp: 0.632 ± 0.435
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.321AspAla: 6.321 ± 0.284
0.632AspCys: 0.632 ± 0.492
3.793AspAsp: 3.793 ± 0.17
1.264AspGlu: 1.264 ± 0.984
1.896AspPhe: 1.896 ± 1.305
5.689AspGly: 5.689 ± 0.208
1.896AspHis: 1.896 ± 0.378
1.264AspIle: 1.264 ± 0.984
3.793AspLys: 3.793 ± 1.683
3.793AspLeu: 3.793 ± 1.683
1.264AspMet: 1.264 ± 0.057
3.161AspAsn: 3.161 ± 0.605
3.793AspPro: 3.793 ± 0.17
1.896AspGln: 1.896 ± 0.549
0.632AspArg: 0.632 ± 0.492
3.161AspSer: 3.161 ± 1.248
2.528AspThr: 2.528 ± 1.74
2.528AspVal: 2.528 ± 0.114
2.528AspTrp: 2.528 ± 0.813
2.528AspTyr: 2.528 ± 1.74
0.0AspXaa: 0.0 ± 0.0
Glu
3.793GluAla: 3.793 ± 0.17
0.632GluCys: 0.632 ± 0.492
1.896GluAsp: 1.896 ± 0.378
1.264GluGlu: 1.264 ± 0.87
1.896GluPhe: 1.896 ± 0.378
3.793GluGly: 3.793 ± 0.17
0.632GluHis: 0.632 ± 0.492
1.264GluIle: 1.264 ± 0.057
1.896GluLys: 1.896 ± 1.305
6.321GluLeu: 6.321 ± 2.496
0.632GluMet: 0.632 ± 0.492
0.632GluAsn: 0.632 ± 0.435
5.057GluPro: 5.057 ± 2.081
1.264GluGln: 1.264 ± 0.984
3.793GluArg: 3.793 ± 1.097
1.264GluSer: 1.264 ± 0.057
3.161GluThr: 3.161 ± 0.321
5.689GluVal: 5.689 ± 0.719
0.0GluTrp: 0.0 ± 0.0
2.528GluTyr: 2.528 ± 1.04
0.0GluXaa: 0.0 ± 0.0
Phe
3.793PheAla: 3.793 ± 0.756
0.632PheCys: 0.632 ± 0.435
1.264PheAsp: 1.264 ± 0.87
1.264PheGlu: 1.264 ± 0.057
0.0PhePhe: 0.0 ± 0.0
4.425PheGly: 4.425 ± 0.662
0.0PheHis: 0.0 ± 0.0
1.896PheIle: 1.896 ± 0.549
0.0PheLys: 0.0 ± 0.0
3.161PheLeu: 3.161 ± 0.605
0.632PheMet: 0.632 ± 0.492
1.896PheAsn: 1.896 ± 1.305
1.896PhePro: 1.896 ± 0.378
0.632PheGln: 0.632 ± 0.435
2.528PheArg: 2.528 ± 0.813
5.689PheSer: 5.689 ± 2.572
0.632PheThr: 0.632 ± 0.492
1.264PheVal: 1.264 ± 0.057
1.264PheTrp: 1.264 ± 0.057
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
8.217GlyAla: 8.217 ± 3.613
3.161GlyCys: 3.161 ± 0.605
3.793GlyAsp: 3.793 ± 0.17
3.793GlyGlu: 3.793 ± 2.024
1.896GlyPhe: 1.896 ± 0.378
12.01GlyGly: 12.01 ± 2.857
0.632GlyHis: 0.632 ± 0.435
2.528GlyIle: 2.528 ± 1.04
1.264GlyLys: 1.264 ± 0.87
10.114GlyLeu: 10.114 ± 0.455
1.264GlyMet: 1.264 ± 0.057
1.896GlyAsn: 1.896 ± 0.378
3.161GlyPro: 3.161 ± 0.605
3.161GlyGln: 3.161 ± 1.532
7.585GlyArg: 7.585 ± 1.268
3.161GlySer: 3.161 ± 0.605
5.689GlyThr: 5.689 ± 0.208
10.114GlyVal: 10.114 ± 1.381
1.264GlyTrp: 1.264 ± 0.87
2.528GlyTyr: 2.528 ± 0.114
0.0GlyXaa: 0.0 ± 0.0
His
1.896HisAla: 1.896 ± 1.305
1.264HisCys: 1.264 ± 0.057
2.528HisAsp: 2.528 ± 1.04
3.161HisGlu: 3.161 ± 1.532
1.896HisPhe: 1.896 ± 0.549
1.264HisGly: 1.264 ± 0.057
0.632HisHis: 0.632 ± 0.492
0.632HisIle: 0.632 ± 0.435
0.632HisLys: 0.632 ± 0.492
1.896HisLeu: 1.896 ± 1.475
0.0HisMet: 0.0 ± 0.0
2.528HisAsn: 2.528 ± 0.114
1.264HisPro: 1.264 ± 0.057
0.0HisGln: 0.0 ± 0.0
1.264HisArg: 1.264 ± 0.87
1.264HisSer: 1.264 ± 0.057
1.896HisThr: 1.896 ± 0.378
1.896HisVal: 1.896 ± 0.378
0.0HisTrp: 0.0 ± 0.0
0.632HisTyr: 0.632 ± 0.435
0.0HisXaa: 0.0 ± 0.0
Ile
2.528IleAla: 2.528 ± 0.114
0.0IleCys: 0.0 ± 0.0
1.264IleAsp: 1.264 ± 0.87
2.528IleGlu: 2.528 ± 1.04
1.896IlePhe: 1.896 ± 0.378
1.896IleGly: 1.896 ± 1.305
1.264IleHis: 1.264 ± 0.057
2.528IleIle: 2.528 ± 0.813
1.264IleLys: 1.264 ± 0.87
2.528IleLeu: 2.528 ± 0.114
0.0IleMet: 0.0 ± 0.0
1.896IleAsn: 1.896 ± 0.378
2.528IlePro: 2.528 ± 0.114
0.0IleGln: 0.0 ± 0.0
6.321IleArg: 6.321 ± 3.423
2.528IleSer: 2.528 ± 1.04
1.264IleThr: 1.264 ± 0.984
1.896IleVal: 1.896 ± 0.378
0.0IleTrp: 0.0 ± 0.0
1.264IleTyr: 1.264 ± 0.87
0.0IleXaa: 0.0 ± 0.0
Lys
0.632LysAla: 0.632 ± 0.435
0.0LysCys: 0.0 ± 0.0
1.896LysAsp: 1.896 ± 1.305
0.0LysGlu: 0.0 ± 0.0
0.632LysPhe: 0.632 ± 0.435
2.528LysGly: 2.528 ± 0.813
0.0LysHis: 0.0 ± 0.0
2.528LysIle: 2.528 ± 1.74
1.264LysLys: 1.264 ± 0.87
3.161LysLeu: 3.161 ± 0.321
0.632LysMet: 0.632 ± 0.435
3.793LysAsn: 3.793 ± 2.61
2.528LysPro: 2.528 ± 0.813
0.632LysGln: 0.632 ± 0.435
0.632LysArg: 0.632 ± 0.435
0.632LysSer: 0.632 ± 0.435
2.528LysThr: 2.528 ± 1.74
1.264LysVal: 1.264 ± 0.87
0.0LysTrp: 0.0 ± 0.0
0.632LysTyr: 0.632 ± 0.492
0.0LysXaa: 0.0 ± 0.0
Leu
10.114LeuAla: 10.114 ± 2.308
2.528LeuCys: 2.528 ± 0.813
6.953LeuAsp: 6.953 ± 2.004
3.161LeuGlu: 3.161 ± 1.248
1.896LeuPhe: 1.896 ± 1.475
13.274LeuGly: 13.274 ± 1.987
1.264LeuHis: 1.264 ± 0.057
3.161LeuIle: 3.161 ± 0.321
3.161LeuLys: 3.161 ± 2.175
9.482LeuLeu: 9.482 ± 3.744
3.793LeuMet: 3.793 ± 1.478
5.057LeuAsn: 5.057 ± 0.227
5.057LeuPro: 5.057 ± 1.154
4.425LeuGln: 4.425 ± 2.118
8.85LeuArg: 8.85 ± 0.398
5.057LeuSer: 5.057 ± 0.227
4.425LeuThr: 4.425 ± 1.191
8.85LeuVal: 8.85 ± 1.456
1.896LeuTrp: 1.896 ± 0.549
1.264LeuTyr: 1.264 ± 0.87
0.0LeuXaa: 0.0 ± 0.0
Met
1.264MetAla: 1.264 ± 0.057
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.896MetGlu: 1.896 ± 0.378
0.0MetPhe: 0.0 ± 0.0
1.264MetGly: 1.264 ± 0.057
0.632MetHis: 0.632 ± 0.492
0.632MetIle: 0.632 ± 0.435
0.632MetLys: 0.632 ± 0.435
3.793MetLeu: 3.793 ± 1.097
0.0MetMet: 0.0 ± 0.0
1.264MetAsn: 1.264 ± 0.057
0.632MetPro: 0.632 ± 0.492
0.632MetGln: 0.632 ± 0.435
1.264MetArg: 1.264 ± 0.87
2.528MetSer: 2.528 ± 0.114
0.632MetThr: 0.632 ± 0.492
1.896MetVal: 1.896 ± 0.378
0.0MetTrp: 0.0 ± 0.0
1.264MetTyr: 1.264 ± 0.057
0.0MetXaa: 0.0 ± 0.0
Asn
3.161AsnAla: 3.161 ± 2.175
1.264AsnCys: 1.264 ± 0.87
2.528AsnAsp: 2.528 ± 1.04
0.632AsnGlu: 0.632 ± 0.435
2.528AsnPhe: 2.528 ± 1.04
3.161AsnGly: 3.161 ± 0.321
0.0AsnHis: 0.0 ± 0.0
2.528AsnIle: 2.528 ± 1.74
0.0AsnLys: 0.0 ± 0.0
3.161AsnLeu: 3.161 ± 0.605
1.264AsnMet: 1.264 ± 0.057
0.0AsnAsn: 0.0 ± 0.0
4.425AsnPro: 4.425 ± 0.264
1.896AsnGln: 1.896 ± 1.305
3.161AsnArg: 3.161 ± 0.321
5.057AsnSer: 5.057 ± 0.699
1.264AsnThr: 1.264 ± 0.057
1.896AsnVal: 1.896 ± 0.378
1.896AsnTrp: 1.896 ± 0.378
0.632AsnTyr: 0.632 ± 0.492
0.0AsnXaa: 0.0 ± 0.0
Pro
8.217ProAla: 8.217 ± 2.686
0.632ProCys: 0.632 ± 0.435
3.161ProAsp: 3.161 ± 0.321
4.425ProGlu: 4.425 ± 1.589
1.896ProPhe: 1.896 ± 0.549
2.528ProGly: 2.528 ± 0.114
1.264ProHis: 1.264 ± 0.87
1.896ProIle: 1.896 ± 0.549
0.632ProLys: 0.632 ± 0.492
6.321ProLeu: 6.321 ± 2.496
0.0ProMet: 0.0 ± 0.324
0.0ProAsn: 0.0 ± 0.0
3.793ProPro: 3.793 ± 2.024
1.896ProGln: 1.896 ± 1.475
4.425ProArg: 4.425 ± 0.662
5.689ProSer: 5.689 ± 0.719
5.689ProThr: 5.689 ± 2.572
3.161ProVal: 3.161 ± 2.459
0.632ProTrp: 0.632 ± 0.492
3.161ProTyr: 3.161 ± 0.321
0.0ProXaa: 0.0 ± 0.0
Gln
3.161GlnAla: 3.161 ± 0.605
0.0GlnCys: 0.0 ± 0.0
1.264GlnAsp: 1.264 ± 0.057
0.0GlnGlu: 0.0 ± 0.0
1.896GlnPhe: 1.896 ± 0.549
3.161GlnGly: 3.161 ± 0.605
1.264GlnHis: 1.264 ± 0.87
0.632GlnIle: 0.632 ± 0.492
1.896GlnLys: 1.896 ± 1.305
1.896GlnLeu: 1.896 ± 0.378
1.264GlnMet: 1.264 ± 0.057
1.264GlnAsn: 1.264 ± 0.057
0.632GlnPro: 0.632 ± 0.492
0.632GlnGln: 0.632 ± 0.435
1.264GlnArg: 1.264 ± 0.057
1.264GlnSer: 1.264 ± 0.057
2.528GlnThr: 2.528 ± 0.114
1.896GlnVal: 1.896 ± 0.378
0.0GlnTrp: 0.0 ± 0.0
1.264GlnTyr: 1.264 ± 0.057
0.0GlnXaa: 0.0 ± 0.0
Arg
5.689ArgAla: 5.689 ± 0.208
1.896ArgCys: 1.896 ± 1.305
2.528ArgAsp: 2.528 ± 1.04
5.057ArgGlu: 5.057 ± 1.626
1.896ArgPhe: 1.896 ± 0.549
6.321ArgGly: 6.321 ± 2.138
3.793ArgHis: 3.793 ± 0.756
1.896ArgIle: 1.896 ± 0.378
1.264ArgLys: 1.264 ± 0.057
8.217ArgLeu: 8.217 ± 0.094
3.161ArgMet: 3.161 ± 0.605
3.161ArgAsn: 3.161 ± 1.248
1.896ArgPro: 1.896 ± 0.549
2.528ArgGln: 2.528 ± 0.813
6.953ArgArg: 6.953 ± 1.703
5.057ArgSer: 5.057 ± 0.699
3.793ArgThr: 3.793 ± 1.683
3.161ArgVal: 3.161 ± 0.321
0.632ArgTrp: 0.632 ± 0.435
2.528ArgTyr: 2.528 ± 0.114
0.0ArgXaa: 0.0 ± 0.0
Ser
6.953SerAla: 6.953 ± 2.629
0.632SerCys: 0.632 ± 0.435
2.528SerAsp: 2.528 ± 0.813
4.425SerGlu: 4.425 ± 1.191
1.896SerPhe: 1.896 ± 0.378
4.425SerGly: 4.425 ± 0.662
1.896SerHis: 1.896 ± 0.549
1.896SerIle: 1.896 ± 0.378
0.632SerLys: 0.632 ± 0.435
8.217SerLeu: 8.217 ± 1.021
1.896SerMet: 1.896 ± 0.549
2.528SerAsn: 2.528 ± 0.114
4.425SerPro: 4.425 ± 0.264
1.896SerGln: 1.896 ± 0.378
3.793SerArg: 3.793 ± 1.683
3.793SerSer: 3.793 ± 1.097
6.321SerThr: 6.321 ± 0.284
5.689SerVal: 5.689 ± 2.572
0.0SerTrp: 0.0 ± 0.0
1.896SerTyr: 1.896 ± 1.305
0.0SerXaa: 0.0 ± 0.0
Thr
3.793ThrAla: 3.793 ± 1.097
1.264ThrCys: 1.264 ± 0.87
3.161ThrAsp: 3.161 ± 1.248
1.264ThrGlu: 1.264 ± 0.87
1.896ThrPhe: 1.896 ± 0.378
3.793ThrGly: 3.793 ± 2.024
2.528ThrHis: 2.528 ± 0.813
3.161ThrIle: 3.161 ± 0.321
1.264ThrLys: 1.264 ± 0.057
4.425ThrLeu: 4.425 ± 1.191
1.896ThrMet: 1.896 ± 0.549
0.632ThrAsn: 0.632 ± 0.435
5.689ThrPro: 5.689 ± 0.208
1.264ThrGln: 1.264 ± 0.984
7.585ThrArg: 7.585 ± 0.586
7.585ThrSer: 7.585 ± 0.341
7.585ThrThr: 7.585 ± 2.194
5.689ThrVal: 5.689 ± 1.646
0.0ThrTrp: 0.0 ± 0.0
1.264ThrTyr: 1.264 ± 0.057
0.0ThrXaa: 0.0 ± 0.0
Val
12.01ValAla: 12.01 ± 3.783
0.632ValCys: 0.632 ± 0.435
6.953ValAsp: 6.953 ± 0.151
5.057ValGlu: 5.057 ± 2.081
1.264ValPhe: 1.264 ± 0.057
6.953ValGly: 6.953 ± 0.151
1.896ValHis: 1.896 ± 1.475
1.264ValIle: 1.264 ± 0.057
1.896ValLys: 1.896 ± 1.305
3.793ValLeu: 3.793 ± 0.756
0.632ValMet: 0.632 ± 0.435
5.057ValAsn: 5.057 ± 1.154
3.161ValPro: 3.161 ± 2.459
2.528ValGln: 2.528 ± 0.114
3.161ValArg: 3.161 ± 0.605
4.425ValSer: 4.425 ± 2.118
6.321ValThr: 6.321 ± 2.138
4.425ValVal: 4.425 ± 1.589
0.0ValTrp: 0.0 ± 0.0
0.632ValTyr: 0.632 ± 0.435
0.0ValXaa: 0.0 ± 0.0
Trp
0.632TrpAla: 0.632 ± 0.492
0.632TrpCys: 0.632 ± 0.435
1.264TrpAsp: 1.264 ± 0.87
0.0TrpGlu: 0.0 ± 0.0
1.264TrpPhe: 1.264 ± 0.87
0.632TrpGly: 0.632 ± 0.492
0.632TrpHis: 0.632 ± 0.492
0.632TrpIle: 0.632 ± 0.492
0.0TrpLys: 0.0 ± 0.0
1.896TrpLeu: 1.896 ± 0.378
0.0TrpMet: 0.0 ± 0.0
0.632TrpAsn: 0.632 ± 0.435
0.632TrpPro: 0.632 ± 0.492
0.0TrpGln: 0.0 ± 0.0
0.632TrpArg: 0.632 ± 0.435
0.632TrpSer: 0.632 ± 0.435
1.264TrpThr: 1.264 ± 0.87
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.264TrpTyr: 1.264 ± 0.057
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.425TyrAla: 4.425 ± 1.191
0.0TyrCys: 0.0 ± 0.0
0.632TyrAsp: 0.632 ± 0.435
0.632TyrGlu: 0.632 ± 0.435
1.264TyrPhe: 1.264 ± 0.057
0.0TyrGly: 0.0 ± 0.0
0.632TyrHis: 0.632 ± 0.492
1.264TyrIle: 1.264 ± 0.87
0.632TyrLys: 0.632 ± 0.435
4.425TyrLeu: 4.425 ± 3.045
0.632TyrMet: 0.632 ± 0.435
1.896TyrAsn: 1.896 ± 1.305
2.528TyrPro: 2.528 ± 0.114
0.632TyrGln: 0.632 ± 0.492
1.896TyrArg: 1.896 ± 0.378
0.632TyrSer: 0.632 ± 0.435
1.896TyrThr: 1.896 ± 0.378
4.425TyrVal: 4.425 ± 2.516
0.0TyrTrp: 0.0 ± 0.0
1.264TyrTyr: 1.264 ± 0.87
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1583 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski