Hymenobacter sp. Fur1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; unclassified Microbacteriaceae

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4945 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A558C4H3|A0A558C4H3_9MICO N-acetyltransferase OS=Hymenobacter sp. Fur1 OX=2594794 GN=FNT36_05510 PE=4 SV=1
MM1 pKa = 7.9PKK3 pKa = 9.48PDD5 pKa = 4.54RR6 pKa = 11.84KK7 pKa = 9.68PDD9 pKa = 3.64PDD11 pKa = 4.25FEE13 pKa = 6.1PDD15 pKa = 3.05YY16 pKa = 10.76DD17 pKa = 4.2TADD20 pKa = 3.34VEE22 pKa = 4.5YY23 pKa = 10.97DD24 pKa = 3.6DD25 pKa = 5.97ALPTYY30 pKa = 8.21YY31 pKa = 10.52HH32 pKa = 6.65EE33 pKa = 4.63VADD36 pKa = 4.78IEE38 pKa = 4.73YY39 pKa = 7.31EE40 pKa = 4.35TPADD44 pKa = 3.97PDD46 pKa = 3.72YY47 pKa = 11.81DD48 pKa = 5.95DD49 pKa = 4.42IAQGSDD55 pKa = 3.04EE56 pKa = 5.62AEE58 pKa = 4.22LADD61 pKa = 4.18PDD63 pKa = 4.27YY64 pKa = 11.6EE65 pKa = 4.33EE66 pKa = 5.1VPQVPALIEE75 pKa = 4.02PEE77 pKa = 4.15PVVMQAASTLFAFEE91 pKa = 3.82VGRR94 pKa = 11.84AVLPLTQALPHH105 pKa = 5.05TVVWRR110 pKa = 11.84GYY112 pKa = 10.1LKK114 pKa = 10.42EE115 pKa = 4.01PHH117 pKa = 6.91PVTGLLRR124 pKa = 11.84RR125 pKa = 11.84VPVYY129 pKa = 10.52RR130 pKa = 11.84LADD133 pKa = 4.46GYY135 pKa = 8.93WDD137 pKa = 3.9CYY139 pKa = 10.58RR140 pKa = 11.84EE141 pKa = 4.14EE142 pKa = 4.22EE143 pKa = 4.36LQVAA147 pKa = 4.46

Molecular weight: 16.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A558BN74|A0A558BN74_9MICO tRNA (Adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB OS=Hymenobacter sp. Fur1 OX=2594794 GN=tsaB PE=4 SV=1
MM1 pKa = 7.45LPCAAKK7 pKa = 9.03WVSVFLLSTVKK18 pKa = 10.54FLGGPLAGSSLGLGFWQTLGLTVAGMMTSVFVFSGIGRR56 pKa = 11.84AWVRR60 pKa = 11.84HH61 pKa = 4.8RR62 pKa = 11.84QQQRR66 pKa = 11.84RR67 pKa = 11.84LRR69 pKa = 11.84RR70 pKa = 11.84APVFSKK76 pKa = 10.55RR77 pKa = 11.84SRR79 pKa = 11.84NIIKK83 pKa = 9.79VFKK86 pKa = 9.62KK87 pKa = 10.3FGMGGIAFLTPILLSPIGGTVIATLLGVPRR117 pKa = 11.84QRR119 pKa = 11.84ILLHH123 pKa = 5.63MFWSAVLWGGVLTLASSRR141 pKa = 11.84ISHH144 pKa = 7.1LLHH147 pKa = 6.7HH148 pKa = 7.17

Molecular weight: 16.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4945

0

4945

1754580

25

3065

354.8

38.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.131 ± 0.053

0.693 ± 0.01

4.843 ± 0.022

4.988 ± 0.035

3.926 ± 0.023

7.748 ± 0.033

2.1 ± 0.018

4.128 ± 0.027

3.829 ± 0.034

11.283 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.707 ± 0.017

3.648 ± 0.032

5.44 ± 0.028

4.81 ± 0.025

5.951 ± 0.031

5.471 ± 0.031

6.378 ± 0.046

7.029 ± 0.027

1.3 ± 0.016

3.595 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski