Crenobacter luteus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Crenobacter

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2660 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A165FGS2|A0A165FGS2_9NEIS Aminotransferase OS=Crenobacter luteus OX=1452487 GN=AVW16_09485 PE=4 SV=1
MM1 pKa = 7.18NAATEE6 pKa = 4.28MPSPINFTDD15 pKa = 3.66SACAKK20 pKa = 10.02VRR22 pKa = 11.84DD23 pKa = 4.61LIAEE27 pKa = 4.23EE28 pKa = 4.66GNPDD32 pKa = 2.99LKK34 pKa = 11.14LRR36 pKa = 11.84VFVTGGGCSGFQYY49 pKa = 10.94GFTFDD54 pKa = 4.69EE55 pKa = 4.93IVNEE59 pKa = 4.24DD60 pKa = 3.66DD61 pKa = 3.97TPIEE65 pKa = 4.07RR66 pKa = 11.84DD67 pKa = 3.25GVTFLVDD74 pKa = 3.48PMSYY78 pKa = 10.19QYY80 pKa = 11.57LVGAEE85 pKa = 3.7IDD87 pKa = 3.88YY88 pKa = 11.15QEE90 pKa = 4.55SLEE93 pKa = 4.18GSQFVIKK100 pKa = 10.6NPNAQTTCGCGSSFSVV116 pKa = 3.54

Molecular weight: 12.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A165ERH9|A0A165ERH9_9NEIS Transposase OS=Crenobacter luteus OX=1452487 GN=AVW16_13825 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.43RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2660

0

2660

835546

44

1609

314.1

34.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.641 ± 0.087

0.874 ± 0.015

5.605 ± 0.038

5.781 ± 0.046

3.625 ± 0.03

8.274 ± 0.044

2.136 ± 0.024

4.138 ± 0.042

3.377 ± 0.046

11.373 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.224 ± 0.021

2.494 ± 0.024

5.034 ± 0.038

3.23 ± 0.031

7.234 ± 0.046

4.757 ± 0.028

4.65 ± 0.029

7.833 ± 0.04

1.361 ± 0.023

2.356 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski