Trichinella nelsoni

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16597 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0RTX7|A0A0V0RTX7_9BILA Cytosolic Fe-S cluster assembly factor NARFL OS=Trichinella nelsoni OX=6336 GN=NARFL PE=3 SV=1
MM1 pKa = 7.52VDD3 pKa = 3.19QKK5 pKa = 11.31FFLFNFPFGNSCIAAFVCFQCLRR28 pKa = 11.84HH29 pKa = 6.14QLADD33 pKa = 4.21WIDD36 pKa = 4.39DD37 pKa = 4.54DD38 pKa = 6.85DD39 pKa = 7.24DD40 pKa = 6.92DD41 pKa = 5.51DD42 pKa = 6.94ASVEE46 pKa = 4.4QNIGWDD52 pKa = 3.51AYY54 pKa = 10.72ALSDD58 pKa = 3.86NKK60 pKa = 10.89SDD62 pKa = 4.06FLFEE66 pKa = 5.37RR67 pKa = 11.84PIQLQLCCC75 pKa = 5.0

Molecular weight: 8.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0RFX1|A0A0V0RFX1_9BILA Uncharacterized protein OS=Trichinella nelsoni OX=6336 GN=T07_3212 PE=4 SV=1
MM1 pKa = 7.25ARR3 pKa = 11.84SARR6 pKa = 11.84SYY8 pKa = 10.11SRR10 pKa = 11.84SRR12 pKa = 11.84SRR14 pKa = 11.84SSTRR18 pKa = 11.84RR19 pKa = 11.84SMSSRR24 pKa = 11.84RR25 pKa = 11.84GSHH28 pKa = 3.8TRR30 pKa = 11.84SRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84SISRR38 pKa = 11.84IQTPKK43 pKa = 10.6RR44 pKa = 11.84STHH47 pKa = 5.63QIVVPSSRR55 pKa = 11.84LKK57 pKa = 9.53LQKK60 pKa = 10.06RR61 pKa = 11.84QSAVPLNGGEE71 pKa = 4.09APSEE75 pKa = 4.16IICPSCLQSLRR86 pKa = 11.84SRR88 pKa = 11.84SRR90 pKa = 11.84SKK92 pKa = 10.85SITRR96 pKa = 11.84KK97 pKa = 9.68KK98 pKa = 10.39SPGRR102 pKa = 11.84KK103 pKa = 8.41GARR106 pKa = 11.84KK107 pKa = 8.39VAVRR111 pKa = 11.84QRR113 pKa = 11.84SKK115 pKa = 11.24SRR117 pKa = 11.84GKK119 pKa = 9.89SRR121 pKa = 11.84RR122 pKa = 11.84NKK124 pKa = 9.54KK125 pKa = 10.13RR126 pKa = 11.84SLKK129 pKa = 10.41KK130 pKa = 10.13SNQKK134 pKa = 10.45AVLIKK139 pKa = 10.45ASKK142 pKa = 9.65SRR144 pKa = 11.84RR145 pKa = 11.84KK146 pKa = 9.76RR147 pKa = 11.84SSLKK151 pKa = 10.56SIPKK155 pKa = 8.38QKK157 pKa = 10.2RR158 pKa = 11.84YY159 pKa = 8.87SLRR162 pKa = 11.84SRR164 pKa = 11.84AAVRR168 pKa = 3.42

Molecular weight: 19.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13005

3592

16597

8169530

30

16931

492.2

55.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.417 ± 0.017

2.624 ± 0.018

5.253 ± 0.015

6.339 ± 0.02

4.605 ± 0.014

4.978 ± 0.021

2.453 ± 0.007

5.544 ± 0.017

5.998 ± 0.02

9.713 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.406 ± 0.008

5.005 ± 0.013

4.346 ± 0.019

4.267 ± 0.013

5.62 ± 0.016

8.373 ± 0.022

5.301 ± 0.011

6.45 ± 0.013

1.213 ± 0.006

3.092 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski