Devosia geojensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3992 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F5FX53|A0A0F5FX53_9RHIZ Alanine racemase OS=Devosia geojensis OX=443610 GN=VE25_05870 PE=3 SV=1
MM1 pKa = 7.23KK2 pKa = 8.8TTILTLASLALLTGAATAQDD22 pKa = 4.25TNPGATANFVDD33 pKa = 4.58VEE35 pKa = 4.29GNEE38 pKa = 4.01IGAVTLLQTPEE49 pKa = 3.95GVNITGALEE58 pKa = 3.88MGVPEE63 pKa = 4.88GEE65 pKa = 4.34HH66 pKa = 6.31GFHH69 pKa = 6.52IHH71 pKa = 5.7EE72 pKa = 5.18TGDD75 pKa = 3.97CDD77 pKa = 3.7PADD80 pKa = 3.97AFEE83 pKa = 4.39SAGDD87 pKa = 3.7HH88 pKa = 6.8FDD90 pKa = 4.28VADD93 pKa = 3.98HH94 pKa = 5.87QHH96 pKa = 6.49GFDD99 pKa = 3.71NPEE102 pKa = 4.0GPHH105 pKa = 7.12AGDD108 pKa = 3.0IHH110 pKa = 7.9NIIADD115 pKa = 3.54ADD117 pKa = 3.48GRR119 pKa = 11.84AVVEE123 pKa = 4.29VTNDD127 pKa = 3.15MVSLVEE133 pKa = 5.05GEE135 pKa = 4.33DD136 pKa = 4.16GYY138 pKa = 11.83LFDD141 pKa = 6.48DD142 pKa = 4.19NGSALVVHH150 pKa = 7.44ADD152 pKa = 3.25PDD154 pKa = 4.2DD155 pKa = 4.07YY156 pKa = 11.72VTDD159 pKa = 4.03PSGNSGDD166 pKa = 4.54RR167 pKa = 11.84IACAVIEE174 pKa = 4.16AAPNN178 pKa = 3.34

Molecular weight: 18.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F5FRM7|A0A0F5FRM7_9RHIZ Heme exporter protein C OS=Devosia geojensis OX=443610 GN=ccmC PE=3 SV=1
MM1 pKa = 7.71PATVTRR7 pKa = 11.84PPPRR11 pKa = 11.84ARR13 pKa = 11.84WPRR16 pKa = 11.84PAQRR20 pKa = 11.84WPRR23 pKa = 11.84RR24 pKa = 11.84ALRR27 pKa = 11.84YY28 pKa = 9.19RR29 pKa = 11.84ATSLRR34 pKa = 11.84RR35 pKa = 11.84TRR37 pKa = 11.84PTPPALWPVSPPSRR51 pKa = 11.84RR52 pKa = 11.84VPRR55 pKa = 11.84NPTSSRR61 pKa = 11.84AMARR65 pKa = 11.84ASTPP69 pKa = 3.03

Molecular weight: 7.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3992

0

3992

1214804

28

2140

304.3

33.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.491 ± 0.05

0.682 ± 0.011

5.594 ± 0.031

6.084 ± 0.04

3.878 ± 0.028

8.636 ± 0.035

1.988 ± 0.019

5.414 ± 0.028

2.819 ± 0.029

10.164 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.494 ± 0.017

2.62 ± 0.021

5.194 ± 0.027

3.008 ± 0.021

6.919 ± 0.037

5.098 ± 0.028

5.384 ± 0.034

7.765 ± 0.032

1.393 ± 0.018

2.376 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski