Campylobacter geochelonis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1901 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A128EJS7|A0A128EJS7_9PROT Dihydrodipicolinate synthase OS=Campylobacter geochelonis OX=1780362 GN=yagE PE=3 SV=1
MM1 pKa = 7.6TYY3 pKa = 10.93DD4 pKa = 3.58EE5 pKa = 5.75LEE7 pKa = 4.27LEE9 pKa = 4.49AYY11 pKa = 9.98LLEE14 pKa = 4.27VLEE17 pKa = 4.66EE18 pKa = 4.36YY19 pKa = 11.13KK20 pKa = 11.19DD21 pKa = 3.84FDD23 pKa = 4.43NMDD26 pKa = 3.88DD27 pKa = 3.8EE28 pKa = 4.62EE29 pKa = 5.94LYY31 pKa = 11.34EE32 pKa = 4.77LMVKK36 pKa = 9.99VASFMDD42 pKa = 3.52EE43 pKa = 4.34DD44 pKa = 3.95YY45 pKa = 11.55EE46 pKa = 4.12EE47 pKa = 5.28AYY49 pKa = 10.27EE50 pKa = 4.74YY51 pKa = 10.34ISQFNPIDD59 pKa = 3.59KK60 pKa = 10.58KK61 pKa = 11.02RR62 pKa = 11.84ILALDD67 pKa = 3.92LPRR70 pKa = 5.85

Molecular weight: 8.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A128EL06|A0A128EL06_9PROT ABC transporter ATP-binding protein OS=Campylobacter geochelonis OX=1780362 GN=ybhF PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.06QPHH8 pKa = 5.76KK9 pKa = 7.92TPKK12 pKa = 9.96KK13 pKa = 7.49RR14 pKa = 11.84THH16 pKa = 5.99GFRR19 pKa = 11.84LRR21 pKa = 11.84MKK23 pKa = 8.96TKK25 pKa = 10.43NGRR28 pKa = 11.84KK29 pKa = 9.3VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.18GRR39 pKa = 11.84SRR41 pKa = 11.84LAAA44 pKa = 4.27

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1901

0

1901

586059

29

3738

308.3

34.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.013 ± 0.057

1.173 ± 0.026

5.686 ± 0.059

6.466 ± 0.06

5.74 ± 0.062

6.226 ± 0.065

1.489 ± 0.024

8.441 ± 0.049

9.251 ± 0.066

9.782 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.34 ± 0.031

5.718 ± 0.06

2.787 ± 0.033

2.621 ± 0.029

3.141 ± 0.035

6.847 ± 0.047

4.504 ± 0.045

6.339 ± 0.052

0.686 ± 0.018

3.749 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski