Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma suillum)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira; Azospira oryzae

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3432 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8QNY1|G8QNY1_AZOOP Elongation factor G OS=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) OX=640081 GN=fusA PE=3 SV=1
MM1 pKa = 7.43EE2 pKa = 4.81VNGSNAYY9 pKa = 9.24VHH11 pKa = 7.78DD12 pKa = 4.3YY13 pKa = 10.48MLTGPALVSGGLISDD28 pKa = 5.06GIEE31 pKa = 3.65ADD33 pKa = 4.27FVADD37 pKa = 3.47VAGQVDD43 pKa = 3.85AARR46 pKa = 4.34

Molecular weight: 4.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8QHU6|G8QHU6_AZOOP Acetolactate synthase OS=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) OX=640081 GN=Dsui_1926 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84THH16 pKa = 5.75GFLVRR21 pKa = 11.84MKK23 pKa = 9.4TKK25 pKa = 10.3GGRR28 pKa = 11.84AVIRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.67GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3432

0

3432

1138217

29

2936

331.6

36.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.309 ± 0.059

0.97 ± 0.015

5.132 ± 0.028

6.117 ± 0.041

3.543 ± 0.024

8.23 ± 0.039

2.19 ± 0.019

4.5 ± 0.033

3.714 ± 0.047

11.438 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.237 ± 0.018

2.776 ± 0.031

5.185 ± 0.037

4.067 ± 0.026

6.78 ± 0.044

5.223 ± 0.035

4.698 ± 0.046

7.214 ± 0.037

1.343 ± 0.018

2.335 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski