Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus maricopensis

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3262 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E8UC11|E8UC11_DEIML Glycosyl transferase group 1 OS=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) OX=709986 GN=Deima_2971 PE=4 SV=1
MM1 pKa = 7.41HH2 pKa = 7.73PATRR6 pKa = 11.84TTPALIRR13 pKa = 11.84TLLTLAALLGLTWAPAHH30 pKa = 6.33AVTFNLSFAGGVDD43 pKa = 3.41VTTGSTCATALNSRR57 pKa = 11.84CRR59 pKa = 11.84FNSVVVGAGTGPYY72 pKa = 9.79QRR74 pKa = 11.84DD75 pKa = 3.56AIITISKK82 pKa = 7.98LTNAAINNSSVAAPNSDD99 pKa = 4.16LDD101 pKa = 3.98NPAPTLTGTAPAASAQDD118 pKa = 3.83FFSPTVDD125 pKa = 3.04VSSAGTGTGWAEE137 pKa = 3.53FTIDD141 pKa = 4.17FIARR145 pKa = 11.84GAAVPAVGAGNAALPGTFHH164 pKa = 5.85VTSFDD169 pKa = 3.32TDD171 pKa = 3.07AANPLRR177 pKa = 11.84EE178 pKa = 4.07FVEE181 pKa = 4.75YY182 pKa = 10.39VAPATTALSSGTTLTSRR199 pKa = 11.84AAVDD203 pKa = 3.27GGVAYY208 pKa = 10.53QSGTTGVSGISTDD221 pKa = 4.26PIYY224 pKa = 10.62KK225 pKa = 10.53ASATYY230 pKa = 10.17TNAASVRR237 pKa = 11.84LVYY240 pKa = 10.18GANTGGTACSGATCEE255 pKa = 4.67RR256 pKa = 11.84LTAFDD261 pKa = 5.35FYY263 pKa = 11.55VADD266 pKa = 3.98SVVLQTDD273 pKa = 3.48VNGFKK278 pKa = 10.48SARR281 pKa = 11.84LTTDD285 pKa = 2.79ADD287 pKa = 3.98GNGAITPGDD296 pKa = 3.57TVTYY300 pKa = 9.0TVTYY304 pKa = 10.65VNTGNTASTGFQITDD319 pKa = 3.69ALPSGVTTTAGAQTVRR335 pKa = 11.84LNGTVTAAARR345 pKa = 11.84NTAYY349 pKa = 9.7TGTGANTTLLAAGQTLPANGTISVDD374 pKa = 2.95IPVVVGAVTSDD385 pKa = 3.15NTVLSNQASGSGSGATNVLSDD406 pKa = 3.96NVDD409 pKa = 2.93ATTAFPPSVTGATGFAAPPAGSVPQTQTAAVSPTTITVRR448 pKa = 11.84RR449 pKa = 11.84QPTLTLNKK457 pKa = 9.3TIAAPGRR464 pKa = 11.84VNTNDD469 pKa = 2.96QFTVQISSGGTTVASATTTGTNTTATTGAVTVASGTTYY507 pKa = 10.55TLSEE511 pKa = 4.1ALAAGSGSTLSAYY524 pKa = 10.33ASTMTCTNATGGSSTTLPGGAGVSFTVTPTFGDD557 pKa = 3.86DD558 pKa = 3.59LTCTFTNTGTPVDD571 pKa = 4.15LAVSQTGPATANLDD585 pKa = 3.43GTVTYY590 pKa = 7.97TVRR593 pKa = 11.84VWNNGSDD600 pKa = 3.64VTGATFTDD608 pKa = 4.14TVPAALTNVTWTCAATGSASCGATTSGTGNTISATLGALTTDD650 pKa = 3.42TGSAATADD658 pKa = 3.77TNYY661 pKa = 8.86VTFTITGTATSTGSLTNTATVTAPGGFTEE690 pKa = 5.85SSTTNNSASTSTTVTATVQCSTLYY714 pKa = 9.53GTFGTGRR721 pKa = 11.84EE722 pKa = 4.12LRR724 pKa = 11.84SVTEE728 pKa = 4.12TNTVGSLIGTIPDD741 pKa = 3.21QGTTASASATLAVYY755 pKa = 10.19GGRR758 pKa = 11.84FFAARR763 pKa = 11.84DD764 pKa = 3.48SDD766 pKa = 3.59RR767 pKa = 11.84TLQVLDD773 pKa = 4.36PATGTWTQGGAFTAGATAGRR793 pKa = 11.84LVRR796 pKa = 11.84MAIGPDD802 pKa = 3.3GTGYY806 pKa = 11.56AMDD809 pKa = 4.57GAGSFYY815 pKa = 10.53TFSTTAPYY823 pKa = 10.13PVTSGPRR830 pKa = 11.84TLTITSAGAPAFGGSGDD847 pKa = 4.54FIVDD851 pKa = 3.47SLGRR855 pKa = 11.84LYY857 pKa = 11.17LLSTAANSTYY867 pKa = 10.71VDD869 pKa = 4.34LYY871 pKa = 11.03EE872 pKa = 5.15LFASTSTAQYY882 pKa = 10.45LGRR885 pKa = 11.84ITNATVINTVFGGFAATPNGIFGRR909 pKa = 11.84SGTGRR914 pKa = 11.84LIQVDD919 pKa = 4.49LANLTVTQIGTDD931 pKa = 3.62VTPGSTDD938 pKa = 3.4LASCTYY944 pKa = 8.44PTFTRR949 pKa = 11.84TVTATQTVTKK959 pKa = 10.23VAGSTGTDD967 pKa = 3.25VRR969 pKa = 11.84PGDD972 pKa = 3.65TLEE975 pKa = 4.02YY976 pKa = 9.76TVVIRR981 pKa = 11.84NSGNIAAGQTTFQEE995 pKa = 4.9AIPAGTTYY1003 pKa = 10.8VPGTTTLNGTAVTDD1017 pKa = 3.84AGGAMPFTTAGSVNTPGQTAGVLSPDD1043 pKa = 3.59TTPGVLDD1050 pKa = 3.8RR1051 pKa = 11.84EE1052 pKa = 4.34AVVRR1056 pKa = 11.84FRR1058 pKa = 11.84VVVGTGTTSVSAQGTTTYY1076 pKa = 11.18SDD1078 pKa = 3.13VGTQTTLTDD1087 pKa = 3.88DD1088 pKa = 4.67PGTATANDD1096 pKa = 4.2PNVTPVNQPPVANNDD1111 pKa = 3.63AASTPAGSPVTFSVTANDD1129 pKa = 3.59TDD1131 pKa = 4.09TAPGTVNAATVDD1143 pKa = 4.31LNPSTAALDD1152 pKa = 3.79TTFTVPNQGTFTVNTAGQVTFTPVAGFSGIVTRR1185 pKa = 11.84TYY1187 pKa = 10.13TVQDD1191 pKa = 3.53NQGFTSNAATITVTVTPRR1209 pKa = 11.84AVNDD1213 pKa = 3.87TASTAPSASVNVPVLNNDD1231 pKa = 2.88VGTGLQPGSVVFVNAPAGSTVTNGGKK1257 pKa = 7.92TLTNAQGTYY1266 pKa = 8.47QVQPDD1271 pKa = 3.9GSVTFTPALGFTGTTTPVSYY1291 pKa = 9.55TVTDD1295 pKa = 3.54AAGTISNPATLTITVSSITAPTATNDD1321 pKa = 3.53AASTPKK1327 pKa = 9.38GTSVTLPGATNDD1339 pKa = 3.79TPGTLPIAPATVDD1352 pKa = 4.74LDD1354 pKa = 4.05PGTAGQQTTLSVTGGTFTANANGTVTFAPAAGFAGTATATYY1395 pKa = 9.03TVADD1399 pKa = 3.76TAGNRR1404 pKa = 11.84SNAATLTVTVTNQTPTATAATNATLPASAGPTALTPGLSGTDD1446 pKa = 3.3PDD1448 pKa = 4.03GTITTFTVTTLPPAGSGTLACGGTPITTVPTSCAPGQLTFDD1489 pKa = 4.08PAATFSGNAAFQFTVTDD1506 pKa = 4.13DD1507 pKa = 3.81NGATSAPATYY1517 pKa = 8.73TIPVDD1522 pKa = 4.01APPVAQNDD1530 pKa = 3.92VASTNPGVPVTFSVTANDD1548 pKa = 3.59TDD1550 pKa = 4.13TAPGTVDD1557 pKa = 3.13PASVVFVNPPAGSTLSPDD1575 pKa = 3.65GKK1577 pKa = 8.99TLTTPGVGTLSANADD1592 pKa = 3.5GTVTFTPAAGFTSGTLTTGYY1612 pKa = 7.95TVRR1615 pKa = 11.84DD1616 pKa = 3.51NLGQVSAPATITVSVPANTDD1636 pKa = 2.9VALSLTGPAFASPGQPVTYY1655 pKa = 9.57TLVVTNGGTNVTGTTVTVPLPAGTTFVSASAGGSVSGGTVTWTLGALAPTEE1706 pKa = 4.26TRR1708 pKa = 11.84TLTLTLTAPNATFINANGVTTLTTTGTVSVAQSEE1742 pKa = 4.85STTANNTDD1750 pKa = 3.1SSSAQLVYY1758 pKa = 10.84AQLTKK1763 pKa = 9.96QVRR1766 pKa = 11.84NVTRR1770 pKa = 11.84AGPFGVTATGQPNDD1784 pKa = 3.47VLEE1787 pKa = 4.12YY1788 pKa = 11.03CIDD1791 pKa = 3.52FRR1793 pKa = 11.84NAGGAALPNFTVLDD1807 pKa = 4.04PVPTGSAALPGAYY1820 pKa = 9.46DD1821 pKa = 3.58AAAGGAGFGVQLTRR1835 pKa = 11.84GGTTSYY1841 pKa = 9.53LTSFADD1847 pKa = 3.8ADD1849 pKa = 3.89NGQLDD1854 pKa = 3.78AAGLNVALGTLAVGEE1869 pKa = 4.19AGRR1872 pKa = 11.84TCFQARR1878 pKa = 11.84IPP1880 pKa = 3.85

Molecular weight: 185.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E8U6Q2|E8U6Q2_DEIML Uncharacterized protein OS=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) OX=709986 GN=Deima_1088 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.11QPNVRR10 pKa = 11.84KK11 pKa = 9.49RR12 pKa = 11.84AKK14 pKa = 8.27THH16 pKa = 5.41GFRR19 pKa = 11.84SRR21 pKa = 11.84MKK23 pKa = 9.3TKK25 pKa = 10.49AGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.03GRR39 pKa = 11.84HH40 pKa = 5.4RR41 pKa = 11.84LTVSVV46 pKa = 3.92

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3262

0

3262

1032088

30

3180

316.4

34.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.399 ± 0.064

0.524 ± 0.01

5.658 ± 0.029

4.913 ± 0.045

3.079 ± 0.023

8.691 ± 0.042

2.553 ± 0.033

3.35 ± 0.037

2.163 ± 0.033

11.485 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.779 ± 0.018

2.559 ± 0.029

5.708 ± 0.032

3.473 ± 0.03

7.78 ± 0.047

4.424 ± 0.03

6.721 ± 0.054

8.091 ± 0.039

1.278 ± 0.019

2.372 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski