Paracoccus aminovorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3736 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I3FJQ1|A0A1I3FJQ1_9RHOB PPC domain-containing protein OS=Paracoccus aminovorans OX=34004 GN=SAMN04488021_1794 PE=4 SV=1
MM1 pKa = 7.51ANAVGRR7 pKa = 11.84TFTAIGFLLEE17 pKa = 4.07SPEE20 pKa = 4.02IVEE23 pKa = 4.8ALHH26 pKa = 5.84TRR28 pKa = 11.84QGLAGVTTQFAGAIAGVAGGLWGASIGAAAAASMAAALVGLLAGMPITILSAVAVVGISFIAASISEE95 pKa = 5.01AIVEE99 pKa = 4.37SLVTQLFEE107 pKa = 5.42GMGDD111 pKa = 3.59DD112 pKa = 5.66LKK114 pKa = 11.7VHH116 pKa = 6.19TNDD119 pKa = 2.43VDD121 pKa = 4.0VYY123 pKa = 10.3IGGLRR128 pKa = 11.84GEE130 pKa = 4.31TLMAGSADD138 pKa = 3.33DD139 pKa = 3.75FVYY142 pKa = 10.83GRR144 pKa = 11.84GGNDD148 pKa = 3.34NISGGTGSDD157 pKa = 3.31HH158 pKa = 7.33LLGGSGNDD166 pKa = 3.78TITGGSGDD174 pKa = 4.25DD175 pKa = 4.28FISGGSGSNNMTGGVGNDD193 pKa = 3.19SYY195 pKa = 11.71VVEE198 pKa = 4.51SEE200 pKa = 3.78GDD202 pKa = 3.72TVNEE206 pKa = 4.04NVNGGVDD213 pKa = 3.6KK214 pKa = 10.84IVANISINLNDD225 pKa = 3.23ARR227 pKa = 11.84YY228 pKa = 10.19ANVEE232 pKa = 3.9NVTLIGEE239 pKa = 4.51SNISATGSDD248 pKa = 4.18HH249 pKa = 7.51DD250 pKa = 4.5NSLIGYY256 pKa = 8.51LGNNRR261 pKa = 11.84LYY263 pKa = 11.38GNDD266 pKa = 3.72GDD268 pKa = 4.53DD269 pKa = 4.43HH270 pKa = 8.24LSGSYY275 pKa = 11.32GNDD278 pKa = 2.88TLYY281 pKa = 11.3GGGGNDD287 pKa = 3.5TLNGGFGLDD296 pKa = 3.78SMIGGAGNDD305 pKa = 3.08IYY307 pKa = 11.62YY308 pKa = 10.4VDD310 pKa = 4.69DD311 pKa = 4.96LGDD314 pKa = 3.68VVIEE318 pKa = 4.15GSNGGEE324 pKa = 3.9DD325 pKa = 4.16TINSAISINLDD336 pKa = 3.46RR337 pKa = 11.84PNDD340 pKa = 3.27AYY342 pKa = 11.0ANVEE346 pKa = 4.14HH347 pKa = 6.84VVLQGTEE354 pKa = 3.98NINAYY359 pKa = 10.33GSVSDD364 pKa = 5.05NSLTGNRR371 pKa = 11.84GNNLLNGRR379 pKa = 11.84AGNDD383 pKa = 3.85SIVGAAGNDD392 pKa = 3.64TLYY395 pKa = 11.45GEE397 pKa = 4.97AGNDD401 pKa = 3.3ILNGGAGVDD410 pKa = 3.78SMVGGTGNDD419 pKa = 2.82IYY421 pKa = 11.02FVDD424 pKa = 5.55DD425 pKa = 3.2IRR427 pKa = 11.84DD428 pKa = 3.92IIVEE432 pKa = 4.25TATGGTDD439 pKa = 3.97RR440 pKa = 11.84INSSISIDD448 pKa = 3.64LNRR451 pKa = 11.84SGDD454 pKa = 3.46VYY456 pKa = 11.72ANIEE460 pKa = 4.16NIILLGAQNLNAYY473 pKa = 9.9GSGGSNNITGNSGANIISGRR493 pKa = 11.84YY494 pKa = 9.56GNDD497 pKa = 2.78NLAGGAGADD506 pKa = 3.2TFIFSKK512 pKa = 10.9NYY514 pKa = 9.5DD515 pKa = 3.25QDD517 pKa = 4.0VITDD521 pKa = 4.31FEE523 pKa = 5.95DD524 pKa = 3.35NTDD527 pKa = 4.06TIRR530 pKa = 11.84LLNFGVTTFTQAQGYY545 pKa = 8.45AADD548 pKa = 3.6WCKK551 pKa = 10.9CGII554 pKa = 4.05

Molecular weight: 56.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I3BQP5|A0A1I3BQP5_9RHOB Two-component system OmpR family response regulator OS=Paracoccus aminovorans OX=34004 GN=SAMN04488021_1245 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.12GGRR29 pKa = 11.84RR30 pKa = 11.84VLNARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.03GRR40 pKa = 11.84KK41 pKa = 6.51TLSAA45 pKa = 4.15

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3736

0

3736

1156815

39

2363

309.6

33.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.476 ± 0.068

0.836 ± 0.01

5.795 ± 0.029

5.628 ± 0.034

3.453 ± 0.024

9.048 ± 0.038

2.033 ± 0.018

4.788 ± 0.029

2.636 ± 0.035

10.449 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.608 ± 0.018

2.293 ± 0.029

5.65 ± 0.031

3.269 ± 0.023

7.789 ± 0.047

4.781 ± 0.027

4.966 ± 0.027

6.993 ± 0.03

1.493 ± 0.017

2.016 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski