Paenibacillus piri

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6802 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V2ZTS5|A0A4V2ZTS5_9BACL Uncharacterized protein OS=Paenibacillus piri OX=2547395 GN=E1757_11950 PE=4 SV=1
MM1 pKa = 6.95NAEE4 pKa = 4.48AIFFEE9 pKa = 4.47FDD11 pKa = 3.18NEE13 pKa = 3.86ASALLAQSTLEE24 pKa = 3.99EE25 pKa = 4.1LGYY28 pKa = 8.7TAGLHH33 pKa = 6.56SEE35 pKa = 4.43FNHH38 pKa = 5.86PTLHH42 pKa = 6.03IQVEE46 pKa = 4.44HH47 pKa = 6.34SVLSSALEE55 pKa = 3.65IAQAHH60 pKa = 6.68GGRR63 pKa = 11.84LVEE66 pKa = 4.3HH67 pKa = 6.54TSGLTEE73 pKa = 3.79NDD75 pKa = 4.02AYY77 pKa = 10.61RR78 pKa = 11.84QAYY81 pKa = 7.62DD82 pKa = 3.58TDD84 pKa = 4.05DD85 pKa = 4.57GYY87 pKa = 10.95ISIPAHH93 pKa = 5.39VVNEE97 pKa = 4.26DD98 pKa = 2.75WSEE101 pKa = 4.09LYY103 pKa = 9.17ATNAEE108 pKa = 4.44NADD111 pKa = 3.63SLYY114 pKa = 11.1APDD117 pKa = 4.65RR118 pKa = 11.84GADD121 pKa = 3.36GAAAGDD127 pKa = 4.13SDD129 pKa = 5.94DD130 pKa = 5.48SGNSDD135 pKa = 3.6NPVSGAAGEE144 pKa = 4.27SDD146 pKa = 3.55SGNGAKK152 pKa = 10.36VFDD155 pKa = 5.17PSDD158 pKa = 3.58DD159 pKa = 4.4DD160 pKa = 4.5YY161 pKa = 12.08SHH163 pKa = 7.34FDD165 pKa = 2.94AGVRR169 pKa = 11.84LL170 pKa = 3.76

Molecular weight: 18.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R5KGH5|A0A4R5KGH5_9BACL Carbohydrate ABC transporter permease OS=Paenibacillus piri OX=2547395 GN=E1757_24110 PE=3 SV=1
MM1 pKa = 7.61GPTFKK6 pKa = 10.92PNVRR10 pKa = 11.84KK11 pKa = 9.84RR12 pKa = 11.84KK13 pKa = 8.89KK14 pKa = 8.64VHH16 pKa = 5.57GFRR19 pKa = 11.84KK20 pKa = 9.99RR21 pKa = 11.84MSSKK25 pKa = 10.47NGRR28 pKa = 11.84KK29 pKa = 9.01VLAARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.23GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6802

0

6802

2221892

21

3639

326.7

36.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.534 ± 0.033

0.832 ± 0.009

5.08 ± 0.022

6.319 ± 0.033

4.213 ± 0.026

7.481 ± 0.03

2.14 ± 0.015

6.68 ± 0.029

5.394 ± 0.03

10.039 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.871 ± 0.014

3.784 ± 0.023

4.247 ± 0.019

3.981 ± 0.024

5.143 ± 0.03

6.208 ± 0.024

5.223 ± 0.027

7.008 ± 0.022

1.33 ± 0.013

3.492 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski