Dermatophilus congolensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Dermatophilaceae; Dermatophilus

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2311 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A239VKI9|A0A239VKI9_9MICO Ribosomal protein S12 methylthiotransferase RimO OS=Dermatophilus congolensis OX=1863 GN=rimO PE=3 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84EE3 pKa = 3.74WKK5 pKa = 10.34QILGALWRR13 pKa = 11.84VYY15 pKa = 9.04WGCCGDD21 pKa = 4.81LLALEE26 pKa = 5.32DD27 pKa = 4.97DD28 pKa = 4.25YY29 pKa = 12.11APGVDD34 pKa = 3.91EE35 pKa = 4.74GAVFADD41 pKa = 3.71AA42 pKa = 5.34

Molecular weight: 4.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A239VA44|A0A239VA44_9MICO Proline-specific permease ProY OS=Dermatophilus congolensis OX=1863 GN=proY PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.8KK16 pKa = 9.13HH17 pKa = 4.41GFRR20 pKa = 11.84SRR22 pKa = 11.84MATRR26 pKa = 11.84AGRR29 pKa = 11.84AILACRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.88GRR40 pKa = 11.84ASISAA45 pKa = 3.59

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2311

0

2311

781931

33

3782

338.4

36.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.114 ± 0.063

0.829 ± 0.016

5.499 ± 0.039

5.553 ± 0.057

2.91 ± 0.033

8.505 ± 0.058

2.639 ± 0.035

4.851 ± 0.047

2.664 ± 0.038

9.615 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.112 ± 0.021

2.721 ± 0.034

5.533 ± 0.043

3.114 ± 0.026

6.774 ± 0.05

5.728 ± 0.045

7.06 ± 0.081

8.392 ± 0.077

1.43 ± 0.024

1.956 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski