Desmospora activa DSM 45169

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora; Desmospora activa

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3643 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T4Z9V4|A0A2T4Z9V4_9BACL SSU ribosomal protein S1P OS=Desmospora activa DSM 45169 OX=1121389 GN=C8J48_1247 PE=4 SV=1
MM1 pKa = 7.2RR2 pKa = 11.84TWVDD6 pKa = 2.81KK7 pKa = 9.29DD8 pKa = 3.37TCIACGACGAAAPDD22 pKa = 3.73VYY24 pKa = 11.0DD25 pKa = 3.88YY26 pKa = 11.76DD27 pKa = 4.14EE28 pKa = 6.24DD29 pKa = 5.94GIAYY33 pKa = 10.11VILDD37 pKa = 4.33DD38 pKa = 4.18NAGTAEE44 pKa = 4.09IPEE47 pKa = 4.27EE48 pKa = 3.72LHH50 pKa = 6.7EE51 pKa = 4.34EE52 pKa = 4.06VRR54 pKa = 11.84DD55 pKa = 3.97AQEE58 pKa = 4.2GCPTDD63 pKa = 3.78SIKK66 pKa = 10.82VEE68 pKa = 4.13EE69 pKa = 4.22

Molecular weight: 7.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T4Z6H4|A0A2T4Z6H4_9BACL Glycerol-1-phosphate dehydrogenase [NAD(P)+] OS=Desmospora activa DSM 45169 OX=1121389 GN=C8J48_0023 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.47NVHH16 pKa = 5.58GFRR19 pKa = 11.84QRR21 pKa = 11.84MSTKK25 pKa = 9.32NGRR28 pKa = 11.84RR29 pKa = 11.84VLRR32 pKa = 11.84NRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.6GRR39 pKa = 11.84KK40 pKa = 8.69VLSAA44 pKa = 4.05

Molecular weight: 5.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3643

0

3643

1080795

29

3206

296.7

33.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.08 ± 0.051

0.774 ± 0.012

5.142 ± 0.035

7.241 ± 0.049

3.932 ± 0.032

7.65 ± 0.037

2.353 ± 0.024

6.203 ± 0.044

4.885 ± 0.036

10.169 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.676 ± 0.021

3.199 ± 0.029

4.444 ± 0.026

4.364 ± 0.028

5.994 ± 0.045

5.461 ± 0.03

5.357 ± 0.035

7.513 ± 0.035

1.524 ± 0.019

3.037 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski