Ictalurid herpesvirus 1 (strain Auburn) (IcHV-1) (Channel catfish herpesvirus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Ictalurivirus; Ictalurid herpesvirus 1

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 76 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q00115|VG03_ICHVA Uncharacterized protein ORF3 OS=Ictalurid herpesvirus 1 (strain Auburn) OX=766178 GN=ORF3 PE=4 SV=1
MM1 pKa = 7.55SATQGPLTEE10 pKa = 4.73AANGCDD16 pKa = 3.4DD17 pKa = 3.86TGLGKK22 pKa = 8.7TKK24 pKa = 10.33NHH26 pKa = 6.59WDD28 pKa = 3.41GAVPRR33 pKa = 11.84TTGEE37 pKa = 3.89PRR39 pKa = 11.84SLLGEE44 pKa = 3.98NRR46 pKa = 11.84ASSVLTTGLGPKK58 pKa = 9.48PGPVWVDD65 pKa = 2.67PRR67 pKa = 11.84IRR69 pKa = 11.84FHH71 pKa = 6.76GVSEE75 pKa = 4.36SLPLTDD81 pKa = 4.8TPWGPPPSPMDD92 pKa = 3.98ALGHH96 pKa = 5.8GVMTPSGLKK105 pKa = 8.78WCPPPPPKK113 pKa = 10.17TEE115 pKa = 3.7SRR117 pKa = 11.84SFLEE121 pKa = 4.42LLAMHH126 pKa = 6.51QKK128 pKa = 10.33AQADD132 pKa = 3.83RR133 pKa = 11.84DD134 pKa = 3.96DD135 pKa = 4.09TVTGEE140 pKa = 4.38TEE142 pKa = 3.79TTARR146 pKa = 11.84EE147 pKa = 3.84EE148 pKa = 4.17DD149 pKa = 3.51DD150 pKa = 4.1VIFVEE155 pKa = 4.56EE156 pKa = 4.4TNVNNPDD163 pKa = 3.54VIEE166 pKa = 4.46VIEE169 pKa = 4.54LKK171 pKa = 10.83DD172 pKa = 3.53VTEE175 pKa = 4.56TGHH178 pKa = 5.5GTLKK182 pKa = 10.03RR183 pKa = 11.84RR184 pKa = 11.84YY185 pKa = 7.82PMRR188 pKa = 11.84VRR190 pKa = 11.84RR191 pKa = 11.84APKK194 pKa = 9.99RR195 pKa = 11.84LVLDD199 pKa = 3.73EE200 pKa = 4.48QVVDD204 pKa = 5.49DD205 pKa = 5.08YY206 pKa = 11.63PADD209 pKa = 3.99SDD211 pKa = 4.93DD212 pKa = 4.25DD213 pKa = 3.95TDD215 pKa = 4.99AEE217 pKa = 4.56SDD219 pKa = 3.57DD220 pKa = 3.93AMSVLSDD227 pKa = 3.39TCRR230 pKa = 11.84TDD232 pKa = 4.67DD233 pKa = 4.27DD234 pKa = 4.85ASSVSSCGSFITDD247 pKa = 3.61GSGSEE252 pKa = 4.17EE253 pKa = 4.57SEE255 pKa = 4.44DD256 pKa = 3.84SASDD260 pKa = 3.47EE261 pKa = 4.41TDD263 pKa = 4.19DD264 pKa = 5.59SDD266 pKa = 5.17FDD268 pKa = 4.12TDD270 pKa = 3.53EE271 pKa = 4.36LTSEE275 pKa = 4.28SEE277 pKa = 4.23EE278 pKa = 4.11EE279 pKa = 4.06EE280 pKa = 4.36SEE282 pKa = 4.39SEE284 pKa = 4.25SEE286 pKa = 4.37SEE288 pKa = 4.35SEE290 pKa = 4.55SEE292 pKa = 4.63SEE294 pKa = 4.76SEE296 pKa = 4.06

Molecular weight: 32.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q00146|VG36_ICHVA Uncharacterized protein ORF36 OS=Ictalurid herpesvirus 1 (strain Auburn) OX=766178 GN=ORF36 PE=4 SV=1
MM1 pKa = 7.28TPVPPSSLRR10 pKa = 11.84SIAPLSTVFLFTDD23 pKa = 3.87NVRR26 pKa = 11.84SNSWFVCKK34 pKa = 10.2IVYY37 pKa = 9.81RR38 pKa = 11.84CLSPRR43 pKa = 11.84RR44 pKa = 11.84IISPSICTAFSCWANHH60 pKa = 5.15GLRR63 pKa = 11.84LSSTAAMRR71 pKa = 11.84RR72 pKa = 11.84SSSSTFLFMASTRR85 pKa = 11.84MSSSTFVCFIFVFCVSRR102 pKa = 11.84TAMVFWSFSEE112 pKa = 4.35STSLLWCIISSSMRR126 pKa = 11.84LCFSITSGSTT136 pKa = 2.85

Molecular weight: 15.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

76

0

76

33924

82

1556

446.4

49.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.464 ± 0.271

1.816 ± 0.149

5.636 ± 0.158

5.769 ± 0.241

4.021 ± 0.182

7.116 ± 0.206

2.273 ± 0.09

5.545 ± 0.175

4.345 ± 0.256

9.114 ± 0.24

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.803 ± 0.112

3.44 ± 0.164

6.143 ± 0.321

2.411 ± 0.165

6.624 ± 0.241

6.367 ± 0.176

7.623 ± 0.498

7.502 ± 0.146

1.197 ± 0.087

2.792 ± 0.14
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski