Arthrobacter sp. YC-RL1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Arthrobacter; unclassified Arthrobacter

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3439 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0H0ZTS0|A0A0H0ZTS0_9MICC Phosphomannomutase OS=Arthrobacter sp. YC-RL1 OX=1652545 GN=AA310_04950 PE=3 SV=1
MM1 pKa = 7.04YY2 pKa = 10.23RR3 pKa = 11.84LSATAAALALGLTACAPTSGEE24 pKa = 4.13DD25 pKa = 3.95GEE27 pKa = 5.62GNAADD32 pKa = 3.66ATKK35 pKa = 10.52TEE37 pKa = 4.35VPALQQYY44 pKa = 7.4YY45 pKa = 7.6TQQVDD50 pKa = 3.25WEE52 pKa = 4.66KK53 pKa = 10.98CGSTIEE59 pKa = 4.33CADD62 pKa = 3.28IEE64 pKa = 4.71VPLDD68 pKa = 3.3YY69 pKa = 10.77AAPEE73 pKa = 4.24KK74 pKa = 10.82DD75 pKa = 4.06SIMLALNRR83 pKa = 11.84RR84 pKa = 11.84AVDD87 pKa = 4.0GAQGNLLVNPGGPGGSGLDD106 pKa = 3.36MVAEE110 pKa = 4.64SVQLMLSNDD119 pKa = 3.32LQRR122 pKa = 11.84AYY124 pKa = 10.94NIIGFDD130 pKa = 3.55PRR132 pKa = 11.84GVGQSTPVTCQTDD145 pKa = 3.62KK146 pKa = 11.34EE147 pKa = 4.15IDD149 pKa = 3.18ASRR152 pKa = 11.84QEE154 pKa = 4.31NLKK157 pKa = 10.64AWDD160 pKa = 3.62PADD163 pKa = 4.3RR164 pKa = 11.84DD165 pKa = 3.65EE166 pKa = 5.27VEE168 pKa = 5.55ADD170 pKa = 3.34TEE172 pKa = 5.23DD173 pKa = 3.87YY174 pKa = 11.5AKK176 pKa = 10.87DD177 pKa = 3.5CAEE180 pKa = 4.04NTGDD184 pKa = 4.78LLGHH188 pKa = 6.49VDD190 pKa = 3.68TVSAAKK196 pKa = 10.85DD197 pKa = 3.23MDD199 pKa = 4.35IIRR202 pKa = 11.84AVLGDD207 pKa = 3.63TQLDD211 pKa = 3.92YY212 pKa = 11.55LGYY215 pKa = 10.5SYY217 pKa = 10.66GTFLGSTYY225 pKa = 11.39ADD227 pKa = 4.32LFPQKK232 pKa = 10.25VGRR235 pKa = 11.84FVLDD239 pKa = 3.52GAMDD243 pKa = 4.77PLATAQQMTLAQAQGFEE260 pKa = 4.34GEE262 pKa = 3.71IDD264 pKa = 3.4AWLQNCLEE272 pKa = 4.5GEE274 pKa = 4.21NCPFTGNLDD283 pKa = 3.59EE284 pKa = 6.57AKK286 pKa = 9.12TQLQDD291 pKa = 3.04FFARR295 pKa = 11.84IEE297 pKa = 4.06EE298 pKa = 4.21QPLEE302 pKa = 4.32SSDD305 pKa = 3.16GRR307 pKa = 11.84TVPIIDD313 pKa = 5.43FINGFIIPLYY323 pKa = 10.99DD324 pKa = 4.12DD325 pKa = 4.32MNWPYY330 pKa = 9.76LTQGMAAAMQGDD342 pKa = 4.33VDD344 pKa = 4.12QILYY348 pKa = 10.61FSDD351 pKa = 4.25LSADD355 pKa = 3.9RR356 pKa = 11.84QEE358 pKa = 4.58DD359 pKa = 3.48GSYY362 pKa = 11.23GSNSTDD368 pKa = 2.62AFTAVNCLDD377 pKa = 3.65RR378 pKa = 11.84PMDD381 pKa = 4.01ASEE384 pKa = 3.96QAMEE388 pKa = 4.56ADD390 pKa = 3.36AKK392 pKa = 10.86ALEE395 pKa = 4.49EE396 pKa = 4.14ASPTIGKK403 pKa = 9.11YY404 pKa = 9.66LAYY407 pKa = 10.5GEE409 pKa = 4.39LTCDD413 pKa = 2.57KK414 pKa = 9.76WSYY417 pKa = 10.5KK418 pKa = 9.91ATGQPEE424 pKa = 4.37SLDD427 pKa = 3.66APGSNQILVVGTTGDD442 pKa = 3.59PATPYY447 pKa = 10.75AWSQSLAEE455 pKa = 4.06QLQNATLLTYY465 pKa = 10.06EE466 pKa = 4.37GHH468 pKa = 6.0GHH470 pKa = 4.9TAYY473 pKa = 10.3GRR475 pKa = 11.84SNQCITDD482 pKa = 3.41AVDD485 pKa = 4.58GYY487 pKa = 11.15LIDD490 pKa = 4.31GKK492 pKa = 10.83VPEE495 pKa = 5.32AGTVCC500 pKa = 4.44

Molecular weight: 53.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0H0ZND4|A0A0H0ZND4_9MICC TfoX_N domain-containing protein OS=Arthrobacter sp. YC-RL1 OX=1652545 GN=AA310_09315 PE=4 SV=1
MM1 pKa = 7.42DD2 pKa = 3.12QQMRR6 pKa = 11.84RR7 pKa = 11.84NPTRR11 pKa = 11.84TRR13 pKa = 11.84RR14 pKa = 11.84HH15 pKa = 5.12NRR17 pKa = 11.84PNRR20 pKa = 11.84QRR22 pKa = 11.84ATTQQRR28 pKa = 11.84RR29 pKa = 11.84QQRR32 pKa = 11.84NQKK35 pKa = 9.18RR36 pKa = 11.84RR37 pKa = 11.84QLSTTQPRR45 pKa = 11.84RR46 pKa = 11.84NAVEE50 pKa = 3.84NQPAKK55 pKa = 9.58HH56 pKa = 5.91HH57 pKa = 6.11PNRR60 pKa = 11.84RR61 pKa = 11.84TLRR64 pKa = 11.84QRR66 pKa = 11.84PTRR69 pKa = 11.84SRR71 pKa = 11.84HH72 pKa = 5.65RR73 pKa = 11.84LDD75 pKa = 3.36NPKK78 pKa = 10.09LVHH81 pKa = 6.24QSRR84 pKa = 11.84TTHH87 pKa = 4.36QRR89 pKa = 11.84TRR91 pKa = 11.84NRR93 pKa = 11.84THH95 pKa = 7.41RR96 pKa = 11.84PPSQPRR102 pKa = 11.84KK103 pKa = 10.07DD104 pKa = 3.45RR105 pKa = 11.84TDD107 pKa = 3.35RR108 pKa = 11.84ATNAHH113 pKa = 6.59ASTRR117 pKa = 11.84ALATRR122 pKa = 11.84KK123 pKa = 9.56RR124 pKa = 3.68

Molecular weight: 15.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3439

0

3439

1069183

41

2163

310.9

33.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.529 ± 0.06

0.64 ± 0.011

5.454 ± 0.037

5.995 ± 0.045

3.332 ± 0.029

8.545 ± 0.04

2.114 ± 0.021

4.867 ± 0.029

3.157 ± 0.032

10.526 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.018

2.681 ± 0.017

4.858 ± 0.027

3.669 ± 0.024

6.137 ± 0.038

6.107 ± 0.029

5.7 ± 0.037

7.872 ± 0.038

1.391 ± 0.016

2.162 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski