Luteibacter rhizovicinus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Luteibacter

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3849 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R3YTY1|A0A4R3YTY1_9GAMM Peptide-methionine (R)-S-oxide reductase OS=Luteibacter rhizovicinus OX=242606 GN=EC912_102261 PE=4 SV=1
MM1 pKa = 7.14TFVVTDD7 pKa = 3.25NCIKK11 pKa = 10.54CKK13 pKa = 10.0YY14 pKa = 7.47TDD16 pKa = 3.85CVEE19 pKa = 4.17VCPVDD24 pKa = 4.13AFHH27 pKa = 7.29EE28 pKa = 5.24GPNFLVIDD36 pKa = 4.26PDD38 pKa = 3.64EE39 pKa = 6.0CIDD42 pKa = 3.79CTLCEE47 pKa = 4.4PEE49 pKa = 4.54CPINAIYY56 pKa = 10.45PEE58 pKa = 4.82DD59 pKa = 4.37DD60 pKa = 3.5VPAGQEE66 pKa = 4.1SFVKK70 pKa = 10.62LNADD74 pKa = 4.05LAKK77 pKa = 9.55DD78 pKa = 3.34WPVITEE84 pKa = 4.43RR85 pKa = 11.84KK86 pKa = 10.04DD87 pKa = 3.46GLPDD91 pKa = 3.79AKK93 pKa = 10.65DD94 pKa = 3.31WEE96 pKa = 4.42NKK98 pKa = 8.62PGKK101 pKa = 9.56IDD103 pKa = 4.36LLQLL107 pKa = 3.66

Molecular weight: 11.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V2W3Z2|A0A4V2W3Z2_9GAMM Orotidine 5'-phosphate decarboxylase OS=Luteibacter rhizovicinus OX=242606 GN=pyrF PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.06LKK11 pKa = 10.38RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.0GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.37TADD26 pKa = 3.15GRR28 pKa = 11.84KK29 pKa = 8.93ILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LIPP44 pKa = 4.02

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3849

0

3849

1339777

29

12081

348.1

37.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.142 ± 0.053

0.78 ± 0.014

6.056 ± 0.037

4.971 ± 0.049

3.532 ± 0.025

8.617 ± 0.058

2.273 ± 0.02

4.622 ± 0.024

3.002 ± 0.035

10.113 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.282 ± 0.022

2.859 ± 0.038

5.135 ± 0.035

3.287 ± 0.025

7.136 ± 0.05

5.769 ± 0.042

5.643 ± 0.059

7.757 ± 0.035

1.449 ± 0.018

2.572 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski