Patagioenas fasciata monilis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosa

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24737 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V4KE22|A0A1V4KE22_PATFA Uncharacterized protein OS=Patagioenas fasciata monilis OX=372326 GN=AV530_019879 PE=4 SV=1
MM1 pKa = 7.31ATFNYY6 pKa = 8.95FRR8 pKa = 11.84LVVPNKK14 pKa = 10.12GYY16 pKa = 10.93SSLDD20 pKa = 3.22QSPDD24 pKa = 3.24EE25 pKa = 4.71KK26 pKa = 11.02PLVALDD32 pKa = 3.94TDD34 pKa = 3.86SDD36 pKa = 4.32DD37 pKa = 4.57DD38 pKa = 4.75FDD40 pKa = 3.67MSRR43 pKa = 11.84YY44 pKa = 9.51SSSGYY49 pKa = 10.65SSAEE53 pKa = 4.23QINQDD58 pKa = 5.22LNIQLLKK65 pKa = 10.76DD66 pKa = 4.18GYY68 pKa = 10.73RR69 pKa = 11.84LDD71 pKa = 5.29EE72 pKa = 4.62IPDD75 pKa = 4.21DD76 pKa = 4.39EE77 pKa = 6.21DD78 pKa = 6.24LDD80 pKa = 5.04LIPPKK85 pKa = 10.4SVNPTCMCCQATSSTACHH103 pKa = 5.73IQQ105 pKa = 2.94

Molecular weight: 11.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V4J8U5|A0A1V4J8U5_PATFA Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Patagioenas fasciata monilis OX=372326 GN=ZADH2 PE=3 SV=1
MM1 pKa = 7.58GGGGGNVRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84TRR13 pKa = 11.84LPPYY17 pKa = 9.56QAAPPPPPAASSRR30 pKa = 11.84GARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84LRR38 pKa = 11.84GGQLARR44 pKa = 11.84LPGRR48 pKa = 11.84PSSRR52 pKa = 11.84SRR54 pKa = 11.84XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATASGAPAVV99 pKa = 3.86

Molecular weight: 6.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

19485

5252

24737

14120877

66

36991

570.8

63.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.87 ± 0.013

2.182 ± 0.013

5.009 ± 0.011

7.404 ± 0.029

3.491 ± 0.012

6.216 ± 0.023

2.499 ± 0.009

4.497 ± 0.012

6.127 ± 0.024

9.537 ± 0.03

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.211 ± 0.008

3.846 ± 0.012

5.815 ± 0.024

4.817 ± 0.02

5.545 ± 0.014

8.453 ± 0.025

5.425 ± 0.016

6.099 ± 0.022

1.163 ± 0.006

2.666 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski