Lobosporangium transversale

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mortierellomycotina; Mortierellomycetes;

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11597 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y2GFQ1|A0A1Y2GFQ1_9FUNG DUF3533 domain-containing protein OS=Lobosporangium transversale OX=64571 GN=BCR41DRAFT_424219 PE=4 SV=1
MM1 pKa = 8.26RR2 pKa = 11.84YY3 pKa = 5.43TTYY6 pKa = 10.79TVTLCLLFALLASAAPVPEE25 pKa = 4.2EE26 pKa = 3.76TQEE29 pKa = 4.59QKK31 pKa = 11.24DD32 pKa = 4.33CLDD35 pKa = 3.37QCLTTEE41 pKa = 5.18DD42 pKa = 3.8EE43 pKa = 4.67CLLNSISMSGCVTSYY58 pKa = 10.99DD59 pKa = 3.19EE60 pKa = 4.97CYY62 pKa = 10.59RR63 pKa = 11.84MCIPTTTPTPTSVSAPAPTPGQGQGQPQPQPQPSIPVVSKK103 pKa = 9.85NQKK106 pKa = 9.71HH107 pKa = 6.28KK108 pKa = 11.05DD109 pKa = 3.51VTHH112 pKa = 5.51EE113 pKa = 4.3TEE115 pKa = 3.79ISSPTKK121 pKa = 10.65KK122 pKa = 10.07EE123 pKa = 3.98DD124 pKa = 3.44EE125 pKa = 4.67KK126 pKa = 10.73EE127 pKa = 4.46TEE129 pKa = 4.21EE130 pKa = 3.99QTHH133 pKa = 5.58EE134 pKa = 4.1EE135 pKa = 4.27EE136 pKa = 4.46KK137 pKa = 11.19DD138 pKa = 3.22GDD140 pKa = 3.67VDD142 pKa = 3.61VDD144 pKa = 3.54VDD146 pKa = 3.79VDD148 pKa = 3.59VDD150 pKa = 3.85EE151 pKa = 4.99EE152 pKa = 5.53DD153 pKa = 3.77GDD155 pKa = 4.24FVEE158 pKa = 6.1IPAPPGGEE166 pKa = 3.91DD167 pKa = 3.69DD168 pKa = 4.99EE169 pKa = 5.92EE170 pKa = 6.1YY171 pKa = 11.09DD172 pKa = 5.76DD173 pKa = 5.52EE174 pKa = 6.3PSDD177 pKa = 3.89YY178 pKa = 11.71

Molecular weight: 19.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y2GY89|A0A1Y2GY89_9FUNG CRAL-TRIO domain-containing protein OS=Lobosporangium transversale OX=64571 GN=BCR41DRAFT_331935 PE=4 SV=1
MM1 pKa = 6.81TTLHH5 pKa = 6.34LQFGLRR11 pKa = 11.84PSHH14 pKa = 6.36PLLRR18 pKa = 11.84RR19 pKa = 11.84VVLPPLLPKK28 pKa = 9.2NTLMTQPQILITHH41 pKa = 7.58LLPSTPIRR49 pKa = 11.84LANANWDD56 pKa = 3.63LPRR59 pKa = 11.84SVNQRR64 pKa = 11.84LPRR67 pKa = 11.84NANRR71 pKa = 11.84RR72 pKa = 11.84LPKK75 pKa = 10.38SKK77 pKa = 10.35NWWLTRR83 pKa = 11.84NVNRR87 pKa = 11.84RR88 pKa = 11.84LPRR91 pKa = 11.84SAGWISIRR99 pKa = 11.84ASWTALALNHH109 pKa = 6.24SSARR113 pKa = 11.84RR114 pKa = 11.84IWVHH118 pKa = 5.86PLFCIRR124 pKa = 11.84TRR126 pKa = 11.84FLMM129 pKa = 4.43

Molecular weight: 15.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11593

4

11597

5469817

49

5664

471.7

52.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.373 ± 0.02

1.244 ± 0.008

5.452 ± 0.017

6.131 ± 0.027

3.651 ± 0.017

5.972 ± 0.019

2.664 ± 0.013

5.485 ± 0.016

5.477 ± 0.022

8.966 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.429 ± 0.009

4.431 ± 0.014

5.341 ± 0.024

4.781 ± 0.026

5.444 ± 0.016

9.23 ± 0.036

6.208 ± 0.016

5.757 ± 0.018

1.104 ± 0.008

2.863 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski