Flavobacterium urocaniciphilum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2554 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H8YT49|A0A1H8YT49_9FLAO Uncharacterized protein OS=Flavobacterium urocaniciphilum OX=1299341 GN=SAMN05444005_101160 PE=4 SV=1
MM1 pKa = 7.56KK2 pKa = 10.44KK3 pKa = 10.55LIFGALLSTLFMLFSCGGDD22 pKa = 3.32DD23 pKa = 4.52NNEE26 pKa = 4.15TEE28 pKa = 4.25NVLTGSMSATINGSSWSSTNGGAIANVMTVGFGGDD63 pKa = 3.53SQKK66 pKa = 11.14SLQIIGIASNTSSFTMNIPIEE87 pKa = 4.08NLAVGSKK94 pKa = 9.07TFSGDD99 pKa = 3.15FAEE102 pKa = 5.0GTLGYY107 pKa = 10.07ISSNQMDD114 pKa = 4.4VFTSQHH120 pKa = 4.73TSGNFTVNITTLNLEE135 pKa = 4.2TGKK138 pKa = 10.12MSGTFSGTLYY148 pKa = 10.83DD149 pKa = 5.04DD150 pKa = 4.77NDD152 pKa = 3.39VSMSITNGVFTDD164 pKa = 3.84VVFLSTDD171 pKa = 3.59YY172 pKa = 11.13YY173 pKa = 11.61SNGSMSLKK181 pKa = 10.3RR182 pKa = 11.84NSGQVFTMDD191 pKa = 4.68AFNEE195 pKa = 4.13DD196 pKa = 3.52GKK198 pKa = 11.2FITIMEE204 pKa = 4.2NSGDD208 pKa = 3.56NSIAIMGNNANLTSDD223 pKa = 3.94FGIYY227 pKa = 10.2SLNFPKK233 pKa = 10.63NIAAGTYY240 pKa = 9.93ALTYY244 pKa = 10.58DD245 pKa = 3.51GTYY248 pKa = 10.41NAGISNSNSQAEE260 pKa = 4.24FTNVSGSLTITSHH273 pKa = 5.77TGNTIVGTFSYY284 pKa = 10.47SANNGSQTVNISNGSFSITHH304 pKa = 5.84NN305 pKa = 3.55

Molecular weight: 32.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9CUV5|A0A1H9CUV5_9FLAO Coproporphyrinogen-III oxidase OS=Flavobacterium urocaniciphilum OX=1299341 GN=SAMN05444005_10595 PE=3 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.35KK16 pKa = 10.31RR17 pKa = 11.84KK18 pKa = 9.82KK19 pKa = 8.65RR20 pKa = 11.84ARR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.91KK27 pKa = 10.59KK28 pKa = 9.82KK29 pKa = 10.51KK30 pKa = 10.04

Molecular weight: 3.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2554

0

2554

874636

30

2378

342.5

38.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.184 ± 0.055

0.857 ± 0.023

5.14 ± 0.036

6.472 ± 0.065

5.543 ± 0.047

6.202 ± 0.054

1.621 ± 0.022

8.295 ± 0.054

8.123 ± 0.083

8.809 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.117 ± 0.026

7.115 ± 0.059

3.26 ± 0.032

3.349 ± 0.026

2.809 ± 0.034

6.537 ± 0.049

6.259 ± 0.096

6.212 ± 0.039

0.97 ± 0.016

4.124 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski