Eubacterium coprostanoligenes

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1647 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4JVP7|A0A1T4JVP7_9FIRM Cobalt/nickel transport system permease protein OS=Eubacterium coprostanoligenes OX=290054 GN=SAMN02745114_00137 PE=4 SV=1
MM1 pKa = 7.52NIKK4 pKa = 9.84IDD6 pKa = 3.71VDD8 pKa = 3.61NLRR11 pKa = 11.84DD12 pKa = 4.01DD13 pKa = 4.19LRR15 pKa = 11.84DD16 pKa = 3.68YY17 pKa = 11.03YY18 pKa = 11.4GSAVGCNPTAMADD31 pKa = 3.81VINIDD36 pKa = 3.52SMSDD40 pKa = 2.96EE41 pKa = 4.51DD42 pKa = 4.14VVEE45 pKa = 4.16KK46 pKa = 10.79AVEE49 pKa = 4.04NGFNLYY55 pKa = 10.42DD56 pKa = 3.84YY57 pKa = 10.76EE58 pKa = 4.38VV59 pKa = 3.13

Molecular weight: 6.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4M6N3|A0A1T4M6N3_9FIRM VanZ like family protein OS=Eubacterium coprostanoligenes OX=290054 GN=SAMN02745114_01153 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.95KK9 pKa = 8.27RR10 pKa = 11.84HH11 pKa = 4.51AQKK14 pKa = 10.15VHH16 pKa = 5.45GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.58VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.07GRR39 pKa = 11.84KK40 pKa = 7.8SLSYY44 pKa = 11.05

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1647

0

1647

547691

41

3655

332.5

37.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.229 ± 0.064

1.702 ± 0.031

6.346 ± 0.046

6.755 ± 0.056

4.423 ± 0.051

6.767 ± 0.052

1.53 ± 0.026

7.678 ± 0.053

7.949 ± 0.053

8.057 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.691 ± 0.031

5.449 ± 0.054

3.167 ± 0.033

2.654 ± 0.025

3.474 ± 0.037

6.226 ± 0.052

5.673 ± 0.051

7.278 ± 0.05

0.775 ± 0.021

4.176 ± 0.045
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski