Candidatus Terasakiella magnetica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Terasakiellaceae; Terasakiella

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3572 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C3RGI3|A0A1C3RGI3_9PROT Chaperone protein DnaJ OS=Candidatus Terasakiella magnetica OX=1867952 GN=dnaJ PE=3 SV=1
MM1 pKa = 7.66IKK3 pKa = 10.62LLLGTAALSVMSLISVGANAADD25 pKa = 4.66PIKK28 pKa = 10.78LSFSGFMEE36 pKa = 3.77QWVGYY41 pKa = 9.9SDD43 pKa = 4.88NEE45 pKa = 4.24GDD47 pKa = 3.89NGAANYY53 pKa = 10.69SEE55 pKa = 4.79VGTFSDD61 pKa = 4.48VEE63 pKa = 4.29LFMKK67 pKa = 10.83GSTRR71 pKa = 11.84LDD73 pKa = 3.2NGLTVGVNFEE83 pKa = 4.18IEE85 pKa = 4.03RR86 pKa = 11.84SGGADD91 pKa = 3.17GVSDD95 pKa = 3.79EE96 pKa = 5.32SYY98 pKa = 11.71VSVTSDD104 pKa = 2.99ALGTLKK110 pKa = 10.71VGSTMGVSYY119 pKa = 10.91GLSNHH124 pKa = 6.02HH125 pKa = 6.93WDD127 pKa = 3.73VGALMDD133 pKa = 5.89DD134 pKa = 4.17GVHH137 pKa = 6.51QLFAVNALGDD147 pKa = 4.41EE148 pKa = 4.42IDD150 pKa = 3.92TTHH153 pKa = 5.93NTSDD157 pKa = 3.31GHH159 pKa = 6.49KK160 pKa = 10.33VIYY163 pKa = 10.24LSPNLGGVQAGFSYY177 pKa = 11.24GLINEE182 pKa = 4.58TNVGSVDD189 pKa = 3.73TLDD192 pKa = 3.81TNNDD196 pKa = 3.09LQYY199 pKa = 11.27NAGIVYY205 pKa = 10.39SADD208 pKa = 3.48YY209 pKa = 11.0DD210 pKa = 3.97GLSVNVDD217 pKa = 3.17VNYY220 pKa = 10.69EE221 pKa = 4.13LIEE224 pKa = 4.9DD225 pKa = 4.14GGLTGGGVASTTAGSEE241 pKa = 4.07TDD243 pKa = 3.21GTDD246 pKa = 3.04QVKK249 pKa = 10.71NEE251 pKa = 3.98EE252 pKa = 3.89SWRR255 pKa = 11.84AGFTVAQQGLTVSASYY271 pKa = 11.32LEE273 pKa = 4.22TDD275 pKa = 3.23NKK277 pKa = 9.91GTVTGKK283 pKa = 10.49DD284 pKa = 3.07STAWEE289 pKa = 4.12AGVTYY294 pKa = 8.75KK295 pKa = 10.38TGPYY299 pKa = 8.8GFSVGYY305 pKa = 8.76FNRR308 pKa = 11.84ATEE311 pKa = 4.29DD312 pKa = 3.46SGLSTALEE320 pKa = 4.57DD321 pKa = 3.68TTDD324 pKa = 3.39MYY326 pKa = 11.41LVSASYY332 pKa = 11.24NLGPGVTLAGSIVTIEE348 pKa = 4.24TDD350 pKa = 3.55DD351 pKa = 5.19ASDD354 pKa = 3.6SSPNQTDD361 pKa = 3.4EE362 pKa = 4.12GSNWALITGLKK373 pKa = 9.24VHH375 pKa = 6.9FF376 pKa = 4.81

Molecular weight: 39.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C3RHC1|A0A1C3RHC1_9PROT Putative D-alanine--D-alanine ligase domain protein OS=Candidatus Terasakiella magnetica OX=1867952 GN=MTBPR1_260007 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVAGRR28 pKa = 11.84RR29 pKa = 11.84VLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.97GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3572

0

3572

1122897

21

14707

314.4

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.976 ± 0.062

1.063 ± 0.024

6.14 ± 0.082

6.955 ± 0.053

4.053 ± 0.029

7.384 ± 0.058

2.238 ± 0.027

6.19 ± 0.036

5.897 ± 0.069

9.66 ± 0.075

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.84 ± 0.037

3.863 ± 0.048

3.999 ± 0.048

3.693 ± 0.027

4.893 ± 0.072

6.088 ± 0.056

5.314 ± 0.086

6.92 ± 0.034

1.144 ± 0.016

2.691 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski