Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_264

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.844AlaAla: 3.844 ± 1.367
0.481AlaCys: 0.481 ± 0.403
3.844AlaAsp: 3.844 ± 1.663
2.883AlaGlu: 2.883 ± 1.176
2.883AlaPhe: 2.883 ± 1.22
5.766AlaGly: 5.766 ± 2.684
0.961AlaHis: 0.961 ± 0.689
2.403AlaIle: 2.403 ± 1.05
3.364AlaLys: 3.364 ± 1.901
6.247AlaLeu: 6.247 ± 1.523
0.481AlaMet: 0.481 ± 0.595
3.364AlaAsn: 3.364 ± 1.486
3.844AlaPro: 3.844 ± 1.215
2.883AlaGln: 2.883 ± 0.613
1.922AlaArg: 1.922 ± 1.726
1.922AlaSer: 1.922 ± 0.434
2.403AlaThr: 2.403 ± 0.801
3.364AlaVal: 3.364 ± 1.625
1.442AlaTrp: 1.442 ± 1.485
3.844AlaTyr: 3.844 ± 0.91
0.0AlaXaa: 0.0 ± 0.0
Cys
1.442CysAla: 1.442 ± 1.094
0.481CysCys: 0.481 ± 0.344
1.442CysAsp: 1.442 ± 1.208
0.481CysGlu: 0.481 ± 0.344
0.0CysPhe: 0.0 ± 0.0
1.442CysGly: 1.442 ± 0.757
0.481CysHis: 0.481 ± 0.344
0.961CysIle: 0.961 ± 0.689
0.481CysLys: 0.481 ± 0.403
0.481CysLeu: 0.481 ± 0.344
0.0CysMet: 0.0 ± 0.0
0.961CysAsn: 0.961 ± 0.767
0.961CysPro: 0.961 ± 0.689
0.481CysGln: 0.481 ± 0.344
0.481CysArg: 0.481 ± 0.344
1.442CysSer: 1.442 ± 0.757
0.481CysThr: 0.481 ± 0.403
0.481CysVal: 0.481 ± 0.344
0.0CysTrp: 0.0 ± 0.0
0.961CysTyr: 0.961 ± 0.428
0.0CysXaa: 0.0 ± 0.0
Asp
3.364AspAla: 3.364 ± 1.47
1.442AspCys: 1.442 ± 1.208
1.922AspAsp: 1.922 ± 0.903
4.325AspGlu: 4.325 ± 2.459
7.689AspPhe: 7.689 ± 3.006
3.364AspGly: 3.364 ± 1.625
1.442AspHis: 1.442 ± 1.033
6.247AspIle: 6.247 ± 2.236
3.364AspLys: 3.364 ± 1.747
4.325AspLeu: 4.325 ± 1.173
1.442AspMet: 1.442 ± 1.591
5.286AspAsn: 5.286 ± 0.727
0.481AspPro: 0.481 ± 0.344
1.922AspGln: 1.922 ± 0.831
0.961AspArg: 0.961 ± 0.628
6.247AspSer: 6.247 ± 1.18
0.961AspThr: 0.961 ± 0.689
4.805AspVal: 4.805 ± 2.057
1.442AspTrp: 1.442 ± 0.665
4.325AspTyr: 4.325 ± 0.98
0.0AspXaa: 0.0 ± 0.0
Glu
3.844GluAla: 3.844 ± 2.401
1.922GluCys: 1.922 ± 0.968
1.922GluAsp: 1.922 ± 0.768
0.961GluGlu: 0.961 ± 0.767
1.922GluPhe: 1.922 ± 0.932
1.442GluGly: 1.442 ± 1.033
1.922GluHis: 1.922 ± 0.968
4.325GluIle: 4.325 ± 1.553
3.364GluLys: 3.364 ± 0.934
3.364GluLeu: 3.364 ± 2.283
1.922GluMet: 1.922 ± 1.278
2.883GluAsn: 2.883 ± 0.685
1.922GluPro: 1.922 ± 0.664
0.481GluGln: 0.481 ± 0.595
2.403GluArg: 2.403 ± 0.664
3.844GluSer: 3.844 ± 2.313
1.922GluThr: 1.922 ± 1.257
1.922GluVal: 1.922 ± 1.236
0.481GluTrp: 0.481 ± 0.595
2.403GluTyr: 2.403 ± 0.881
0.0GluXaa: 0.0 ± 0.0
Phe
4.805PheAla: 4.805 ± 1.328
0.0PheCys: 0.0 ± 0.0
6.247PheAsp: 6.247 ± 1.651
1.922PheGlu: 1.922 ± 0.434
2.403PhePhe: 2.403 ± 0.6
4.805PheGly: 4.805 ± 1.106
0.961PheHis: 0.961 ± 0.689
5.286PheIle: 5.286 ± 1.506
2.403PheLys: 2.403 ± 1.843
5.286PheLeu: 5.286 ± 1.891
0.481PheMet: 0.481 ± 0.374
5.766PheAsn: 5.766 ± 1.049
2.403PhePro: 2.403 ± 1.395
1.442PheGln: 1.442 ± 1.026
1.442PheArg: 1.442 ± 0.757
5.286PheSer: 5.286 ± 1.44
2.883PheThr: 2.883 ± 1.168
5.766PheVal: 5.766 ± 1.854
0.0PheTrp: 0.0 ± 0.0
2.883PheTyr: 2.883 ± 1.514
0.0PheXaa: 0.0 ± 0.0
Gly
2.403GlyAla: 2.403 ± 0.664
0.961GlyCys: 0.961 ± 0.689
3.364GlyAsp: 3.364 ± 1.287
3.364GlyGlu: 3.364 ± 0.777
3.364GlyPhe: 3.364 ± 1.164
0.481GlyGly: 0.481 ± 0.344
0.481GlyHis: 0.481 ± 0.595
3.364GlyIle: 3.364 ± 1.395
3.364GlyLys: 3.364 ± 0.956
3.844GlyLeu: 3.844 ± 1.913
2.403GlyMet: 2.403 ± 0.831
5.286GlyAsn: 5.286 ± 1.997
0.481GlyPro: 0.481 ± 0.851
0.961GlyGln: 0.961 ± 0.478
2.883GlyArg: 2.883 ± 0.832
6.247GlySer: 6.247 ± 1.506
1.922GlyThr: 1.922 ± 0.957
2.883GlyVal: 2.883 ± 1.169
0.961GlyTrp: 0.961 ± 0.689
1.442GlyTyr: 1.442 ± 0.665
0.0GlyXaa: 0.0 ± 0.0
His
0.481HisAla: 0.481 ± 0.344
0.481HisCys: 0.481 ± 0.403
0.481HisAsp: 0.481 ± 0.344
1.922HisGlu: 1.922 ± 1.033
0.481HisPhe: 0.481 ± 0.344
0.961HisGly: 0.961 ± 0.478
0.481HisHis: 0.481 ± 0.595
0.481HisIle: 0.481 ± 0.595
0.961HisLys: 0.961 ± 0.628
2.403HisLeu: 2.403 ± 1.064
0.0HisMet: 0.0 ± 0.0
1.922HisAsn: 1.922 ± 0.968
1.442HisPro: 1.442 ± 0.665
0.961HisGln: 0.961 ± 0.767
1.442HisArg: 1.442 ± 0.832
1.442HisSer: 1.442 ± 0.665
0.961HisThr: 0.961 ± 0.428
0.961HisVal: 0.961 ± 0.689
0.0HisTrp: 0.0 ± 0.0
1.442HisTyr: 1.442 ± 0.757
0.0HisXaa: 0.0 ± 0.0
Ile
3.364IleAla: 3.364 ± 0.583
0.481IleCys: 0.481 ± 0.403
5.766IleAsp: 5.766 ± 0.9
0.961IleGlu: 0.961 ± 0.689
3.844IlePhe: 3.844 ± 1.914
3.844IleGly: 3.844 ± 1.175
0.961IleHis: 0.961 ± 0.775
1.922IleIle: 1.922 ± 1.016
3.844IleLys: 3.844 ± 2.025
1.922IleLeu: 1.922 ± 0.903
0.481IleMet: 0.481 ± 0.344
3.844IleAsn: 3.844 ± 1.406
2.883IlePro: 2.883 ± 1.051
1.922IleGln: 1.922 ± 0.664
2.403IleArg: 2.403 ± 0.664
8.65IleSer: 8.65 ± 1.381
3.844IleThr: 3.844 ± 1.722
2.403IleVal: 2.403 ± 1.13
0.481IleTrp: 0.481 ± 0.403
2.883IleTyr: 2.883 ± 1.534
0.0IleXaa: 0.0 ± 0.0
Lys
3.844LysAla: 3.844 ± 1.244
1.922LysCys: 1.922 ± 0.756
5.286LysAsp: 5.286 ± 1.711
3.364LysGlu: 3.364 ± 0.934
2.403LysPhe: 2.403 ± 0.972
3.364LysGly: 3.364 ± 1.779
0.961LysHis: 0.961 ± 0.805
2.403LysIle: 2.403 ± 1.281
2.883LysLys: 2.883 ± 2.682
3.844LysLeu: 3.844 ± 0.688
0.0LysMet: 0.0 ± 0.0
4.805LysAsn: 4.805 ± 3.135
2.403LysPro: 2.403 ± 0.594
1.922LysGln: 1.922 ± 1.236
3.364LysArg: 3.364 ± 1.886
7.208LysSer: 7.208 ± 4.087
1.442LysThr: 1.442 ± 1.033
3.364LysVal: 3.364 ± 0.583
0.0LysTrp: 0.0 ± 0.0
2.883LysTyr: 2.883 ± 1.341
0.0LysXaa: 0.0 ± 0.0
Leu
3.364LeuAla: 3.364 ± 1.287
0.481LeuCys: 0.481 ± 0.344
4.805LeuAsp: 4.805 ± 1.105
4.805LeuGlu: 4.805 ± 2.149
5.766LeuPhe: 5.766 ± 2.127
5.766LeuGly: 5.766 ± 2.187
0.481LeuHis: 0.481 ± 0.403
6.247LeuIle: 6.247 ± 1.537
5.766LeuLys: 5.766 ± 2.29
8.65LeuLeu: 8.65 ± 1.389
2.403LeuMet: 2.403 ± 1.086
5.766LeuAsn: 5.766 ± 4.187
4.325LeuPro: 4.325 ± 0.961
5.766LeuGln: 5.766 ± 0.848
6.728LeuArg: 6.728 ± 2.281
6.728LeuSer: 6.728 ± 2.162
4.805LeuThr: 4.805 ± 1.022
2.883LeuVal: 2.883 ± 0.718
0.961LeuTrp: 0.961 ± 0.428
2.883LeuTyr: 2.883 ± 1.169
0.0LeuXaa: 0.0 ± 0.0
Met
1.442MetAla: 1.442 ± 1.023
0.0MetCys: 0.0 ± 0.0
0.481MetAsp: 0.481 ± 0.344
0.961MetGlu: 0.961 ± 0.478
2.403MetPhe: 2.403 ± 0.603
0.0MetGly: 0.0 ± 0.0
0.961MetHis: 0.961 ± 0.767
0.0MetIle: 0.0 ± 0.0
0.961MetLys: 0.961 ± 0.628
1.922MetLeu: 1.922 ± 1.203
0.0MetMet: 0.0 ± 0.0
2.403MetAsn: 2.403 ± 1.13
0.481MetPro: 0.481 ± 0.851
0.481MetGln: 0.481 ± 0.595
1.922MetArg: 1.922 ± 0.831
1.922MetSer: 1.922 ± 1.365
0.481MetThr: 0.481 ± 1.036
0.961MetVal: 0.961 ± 0.767
0.0MetTrp: 0.0 ± 0.0
1.442MetTyr: 1.442 ± 1.026
0.0MetXaa: 0.0 ± 0.0
Asn
4.325AsnAla: 4.325 ± 1.068
0.0AsnCys: 0.0 ± 0.0
5.286AsnAsp: 5.286 ± 2.949
3.364AsnGlu: 3.364 ± 2.243
1.922AsnPhe: 1.922 ± 0.932
3.364AsnGly: 3.364 ± 1.883
2.883AsnHis: 2.883 ± 0.965
3.844AsnIle: 3.844 ± 1.329
3.844AsnLys: 3.844 ± 1.681
5.286AsnLeu: 5.286 ± 1.323
0.961AsnMet: 0.961 ± 0.628
6.247AsnAsn: 6.247 ± 1.875
6.247AsnPro: 6.247 ± 1.244
6.247AsnGln: 6.247 ± 3.205
1.442AsnArg: 1.442 ± 0.665
7.689AsnSer: 7.689 ± 1.724
3.364AsnThr: 3.364 ± 1.395
3.844AsnVal: 3.844 ± 2.112
0.481AsnTrp: 0.481 ± 0.403
5.286AsnTyr: 5.286 ± 1.262
0.0AsnXaa: 0.0 ± 0.0
Pro
2.883ProAla: 2.883 ± 0.904
0.961ProCys: 0.961 ± 0.428
3.844ProAsp: 3.844 ± 1.879
2.403ProGlu: 2.403 ± 0.603
3.364ProPhe: 3.364 ± 0.765
0.961ProGly: 0.961 ± 0.428
1.442ProHis: 1.442 ± 0.416
2.883ProIle: 2.883 ± 1.625
1.922ProLys: 1.922 ± 0.768
6.247ProLeu: 6.247 ± 2.104
0.0ProMet: 0.0 ± 0.0
1.442ProAsn: 1.442 ± 1.033
1.922ProPro: 1.922 ± 0.857
1.922ProGln: 1.922 ± 0.434
0.961ProArg: 0.961 ± 0.478
4.805ProSer: 4.805 ± 1.106
2.883ProThr: 2.883 ± 1.625
1.442ProVal: 1.442 ± 0.752
0.0ProTrp: 0.0 ± 0.0
2.883ProTyr: 2.883 ± 1.358
0.0ProXaa: 0.0 ± 0.0
Gln
3.364GlnAla: 3.364 ± 2.13
0.0GlnCys: 0.0 ± 0.0
2.403GlnAsp: 2.403 ± 1.722
0.961GlnGlu: 0.961 ± 0.478
4.325GlnPhe: 4.325 ± 0.866
1.442GlnGly: 1.442 ± 1.46
0.961GlnHis: 0.961 ± 0.689
2.403GlnIle: 2.403 ± 1.835
2.403GlnLys: 2.403 ± 0.934
3.844GlnLeu: 3.844 ± 1.24
2.403GlnMet: 2.403 ± 1.096
3.364GlnAsn: 3.364 ± 1.332
2.883GlnPro: 2.883 ± 1.462
3.844GlnGln: 3.844 ± 1.96
2.883GlnArg: 2.883 ± 1.636
2.883GlnSer: 2.883 ± 1.672
3.364GlnThr: 3.364 ± 2.623
1.922GlnVal: 1.922 ± 1.602
0.961GlnTrp: 0.961 ± 0.428
3.364GlnTyr: 3.364 ± 1.779
0.0GlnXaa: 0.0 ± 0.0
Arg
2.403ArgAla: 2.403 ± 1.482
0.961ArgCys: 0.961 ± 0.805
3.844ArgAsp: 3.844 ± 1.24
2.883ArgGlu: 2.883 ± 0.832
2.883ArgPhe: 2.883 ± 0.807
2.403ArgGly: 2.403 ± 1.162
0.0ArgHis: 0.0 ± 0.0
2.403ArgIle: 2.403 ± 1.149
2.403ArgLys: 2.403 ± 1.017
3.844ArgLeu: 3.844 ± 1.849
1.442ArgMet: 1.442 ± 1.063
2.883ArgAsn: 2.883 ± 0.807
2.403ArgPro: 2.403 ± 1.064
2.403ArgGln: 2.403 ± 0.6
0.961ArgArg: 0.961 ± 0.428
5.286ArgSer: 5.286 ± 1.913
1.442ArgThr: 1.442 ± 0.584
2.883ArgVal: 2.883 ± 1.051
0.0ArgTrp: 0.0 ± 0.0
1.442ArgTyr: 1.442 ± 0.775
0.0ArgXaa: 0.0 ± 0.0
Ser
5.766SerAla: 5.766 ± 1.611
0.961SerCys: 0.961 ± 0.689
6.247SerAsp: 6.247 ± 1.037
3.364SerGlu: 3.364 ± 1.628
8.169SerPhe: 8.169 ± 2.612
3.364SerGly: 3.364 ± 2.683
0.481SerHis: 0.481 ± 0.403
5.286SerIle: 5.286 ± 1.357
4.805SerLys: 4.805 ± 1.93
9.611SerLeu: 9.611 ± 1.567
1.922SerMet: 1.922 ± 1.01
7.208SerAsn: 7.208 ± 1.996
2.883SerPro: 2.883 ± 0.965
6.728SerGln: 6.728 ± 1.15
6.247SerArg: 6.247 ± 1.875
8.65SerSer: 8.65 ± 1.101
3.364SerThr: 3.364 ± 2.069
2.883SerVal: 2.883 ± 1.288
0.0SerTrp: 0.0 ± 0.0
3.364SerTyr: 3.364 ± 1.069
0.0SerXaa: 0.0 ± 0.0
Thr
2.403ThrAla: 2.403 ± 1.05
0.961ThrCys: 0.961 ± 0.428
2.883ThrAsp: 2.883 ± 1.33
1.442ThrGlu: 1.442 ± 0.584
0.481ThrPhe: 0.481 ± 0.403
1.442ThrGly: 1.442 ± 1.023
0.961ThrHis: 0.961 ± 0.689
1.922ThrIle: 1.922 ± 0.434
3.364ThrLys: 3.364 ± 1.556
7.208ThrLeu: 7.208 ± 1.128
0.481ThrMet: 0.481 ± 0.344
2.403ThrAsn: 2.403 ± 1.482
1.442ThrPro: 1.442 ± 1.665
2.403ThrGln: 2.403 ± 1.13
1.442ThrArg: 1.442 ± 0.832
2.883ThrSer: 2.883 ± 0.832
2.883ThrThr: 2.883 ± 0.78
1.442ThrVal: 1.442 ± 1.033
0.961ThrTrp: 0.961 ± 0.478
3.364ThrTyr: 3.364 ± 0.896
0.0ThrXaa: 0.0 ± 0.0
Val
2.883ValAla: 2.883 ± 0.718
0.481ValCys: 0.481 ± 0.344
1.922ValAsp: 1.922 ± 0.768
1.922ValGlu: 1.922 ± 1.203
3.844ValPhe: 3.844 ± 1.723
4.805ValGly: 4.805 ± 1.778
1.442ValHis: 1.442 ± 0.752
1.922ValIle: 1.922 ± 0.968
4.325ValLys: 4.325 ± 1.636
4.805ValLeu: 4.805 ± 1.022
0.961ValMet: 0.961 ± 0.726
2.883ValAsn: 2.883 ± 1.501
3.844ValPro: 3.844 ± 1.053
2.403ValGln: 2.403 ± 0.934
1.922ValArg: 1.922 ± 1.134
3.844ValSer: 3.844 ± 1.183
1.442ValThr: 1.442 ± 1.023
3.364ValVal: 3.364 ± 1.182
0.0ValTrp: 0.0 ± 0.0
2.403ValTyr: 2.403 ± 1.393
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.481TrpCys: 0.481 ± 0.85
0.0TrpAsp: 0.0 ± 0.0
0.481TrpGlu: 0.481 ± 0.344
0.961TrpPhe: 0.961 ± 0.428
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.481TrpIle: 0.481 ± 0.344
0.481TrpLys: 0.481 ± 0.344
0.961TrpLeu: 0.961 ± 0.428
0.0TrpMet: 0.0 ± 0.0
0.961TrpAsn: 0.961 ± 0.428
0.0TrpPro: 0.0 ± 0.0
0.481TrpGln: 0.481 ± 0.595
2.403TrpArg: 2.403 ± 1.507
0.481TrpSer: 0.481 ± 0.403
0.481TrpThr: 0.481 ± 1.036
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.481TrpTyr: 0.481 ± 0.344
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.922TyrAla: 1.922 ± 0.92
0.481TyrCys: 0.481 ± 0.344
3.364TyrAsp: 3.364 ± 0.956
2.883TyrGlu: 2.883 ± 1.341
3.364TyrPhe: 3.364 ± 0.934
1.442TyrGly: 1.442 ± 0.665
1.442TyrHis: 1.442 ± 0.757
1.922TyrIle: 1.922 ± 1.41
3.364TyrLys: 3.364 ± 1.06
5.286TyrLeu: 5.286 ± 1.256
0.961TyrMet: 0.961 ± 0.689
6.247TyrAsn: 6.247 ± 2.177
1.922TyrPro: 1.922 ± 1.134
4.325TyrGln: 4.325 ± 3.705
0.961TyrArg: 0.961 ± 0.428
3.844TyrSer: 3.844 ± 1.619
1.442TyrThr: 1.442 ± 1.094
3.844TyrVal: 3.844 ± 2.026
0.961TyrTrp: 0.961 ± 0.976
0.961TyrTyr: 0.961 ± 0.805
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (2082 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski