Desulfovibrio carbinoliphilus subsp. oakridgensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio carbinoliphilus

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3713 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G7Q8V4|G7Q8V4_9DELT Uncharacterized protein OS=Desulfovibrio carbinoliphilus subsp. oakridgensis OX=694327 GN=DFW101_1432 PE=4 SV=1
MM1 pKa = 8.02ADD3 pKa = 3.16TGNPGTFLLFSDD15 pKa = 3.53VHH17 pKa = 6.86FDD19 pKa = 3.72PFADD23 pKa = 4.12PSLVPALAASDD34 pKa = 3.7VSAWTGLLSSSSQTAYY50 pKa = 10.43AAYY53 pKa = 9.88GSDD56 pKa = 3.03SNYY59 pKa = 10.4PLFEE63 pKa = 4.36SALDD67 pKa = 3.79DD68 pKa = 3.75MAARR72 pKa = 11.84AADD75 pKa = 3.74VSTILYY81 pKa = 9.46PGDD84 pKa = 3.33ILAHH88 pKa = 6.89DD89 pKa = 5.06FPQDD93 pKa = 3.51YY94 pKa = 10.63AALTGDD100 pKa = 4.05TSQAGLDD107 pKa = 3.39AFAQKK112 pKa = 9.06TVAFFVQEE120 pKa = 3.88VDD122 pKa = 3.77SRR124 pKa = 11.84FPDD127 pKa = 3.49AMVLVADD134 pKa = 5.27GNCDD138 pKa = 3.4TDD140 pKa = 3.71NMSGSIGARR149 pKa = 11.84PGDD152 pKa = 4.12PYY154 pKa = 11.45LSDD157 pKa = 3.69TAPLLAQAFFNNDD170 pKa = 2.82TDD172 pKa = 3.68RR173 pKa = 11.84TAFASTYY180 pKa = 11.02AVGGYY185 pKa = 9.53YY186 pKa = 10.23AVEE189 pKa = 4.22PDD191 pKa = 3.73GPTGLKK197 pKa = 10.61YY198 pKa = 10.26IVLNDD203 pKa = 3.61NLWITEE209 pKa = 3.97YY210 pKa = 11.08DD211 pKa = 3.75DD212 pKa = 4.17PAAGAVEE219 pKa = 4.26LSWFASEE226 pKa = 4.9LAEE229 pKa = 4.91SAQNFQKK236 pKa = 10.5VWVVGHH242 pKa = 6.41IPVGANASSVVASYY256 pKa = 11.12DD257 pKa = 3.16QTGRR261 pKa = 11.84IAYY264 pKa = 9.8SGNLDD269 pKa = 3.88DD270 pKa = 5.45GFNAAFVGLEE280 pKa = 3.92LAYY283 pKa = 10.59DD284 pKa = 3.77ATIKK288 pKa = 10.24ATFTGHH294 pKa = 4.54THH296 pKa = 6.55NDD298 pKa = 3.4DD299 pKa = 3.46FRR301 pKa = 11.84LVTDD305 pKa = 4.54GSGAANLLRR314 pKa = 11.84IAPSISPVFDD324 pKa = 3.94NNPGYY329 pKa = 10.14QVYY332 pKa = 10.7SFDD335 pKa = 3.73TRR337 pKa = 11.84TSSLLDD343 pKa = 3.29EE344 pKa = 4.46TTYY347 pKa = 11.15TLDD350 pKa = 3.88LQSSSPAWSKK360 pKa = 10.51EE361 pKa = 3.5YY362 pKa = 10.56AYY364 pKa = 10.63AEE366 pKa = 4.55TYY368 pKa = 10.15GQTLATPQEE377 pKa = 3.91WQAVYY382 pKa = 10.29GAILTNPATQAAYY395 pKa = 9.42IDD397 pKa = 4.18HH398 pKa = 7.36LGQGAATQFPVTAANLPAYY417 pKa = 9.78LATPGFVLPATYY429 pKa = 10.29NAAVAALAGG438 pKa = 3.81

Molecular weight: 46.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G7Q6L8|G7Q6L8_9DELT NADH dehydrogenase (Quinone) OS=Desulfovibrio carbinoliphilus subsp. oakridgensis OX=694327 GN=DFW101_1623 PE=4 SV=1
MM1 pKa = 7.43SKK3 pKa = 8.62KK4 pKa = 8.87TYY6 pKa = 9.67QPSKK10 pKa = 9.23IRR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 8.13RR15 pKa = 11.84THH17 pKa = 5.96GFLVRR22 pKa = 11.84SRR24 pKa = 11.84TKK26 pKa = 10.32NGQAILRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.7GRR40 pKa = 11.84KK41 pKa = 8.66RR42 pKa = 11.84LAVV45 pKa = 3.41

Molecular weight: 5.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3713

0

3713

1225608

30

2352

330.1

35.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.929 ± 0.076

1.281 ± 0.017

5.48 ± 0.027

5.761 ± 0.041

3.872 ± 0.026

8.783 ± 0.042

1.871 ± 0.017

4.223 ± 0.035

3.668 ± 0.034

11.123 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.327 ± 0.016

2.33 ± 0.023

5.645 ± 0.039

2.746 ± 0.024

7.162 ± 0.041

4.823 ± 0.03

5.032 ± 0.035

7.477 ± 0.033

1.108 ± 0.015

2.359 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski