Vibrio phage ICP2_2013_A_Haiti

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Zobellviridae; unclassified Zobellviridae

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 57 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A076G5G2|A0A076G5G2_9CAUD Uncharacterized protein OS=Vibrio phage ICP2_2013_A_Haiti OX=1529058 GN=ICP22013AHaiti_34 PE=4 SV=1
MM1 pKa = 7.7SINLSSISIGTKK13 pKa = 9.7VRR15 pKa = 11.84GLSRR19 pKa = 11.84PDD21 pKa = 4.21DD22 pKa = 4.44LDD24 pKa = 4.94DD25 pKa = 5.46GYY27 pKa = 11.4LFSEE31 pKa = 4.36DD32 pKa = 4.15CILEE36 pKa = 4.18RR37 pKa = 11.84EE38 pKa = 4.25EE39 pKa = 3.86EE40 pKa = 4.33SAVIIAIFGVADD52 pKa = 4.23LSDD55 pKa = 4.35PYY57 pKa = 11.19AAVPFKK63 pKa = 10.57ILSGTVDD70 pKa = 3.81DD71 pKa = 5.11LAGSVYY77 pKa = 10.11TVGDD81 pKa = 4.01TVHH84 pKa = 7.04LDD86 pKa = 3.32ANDD89 pKa = 3.17ILEE92 pKa = 4.29IVEE95 pKa = 4.06

Molecular weight: 10.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A076G594|A0A076G594_9CAUD Nmad5 domain-containing protein OS=Vibrio phage ICP2_2013_A_Haiti OX=1529058 GN=ICP22013AHaiti_36 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 10.23QRR4 pKa = 11.84NPNRR8 pKa = 11.84AHH10 pKa = 5.66SPEE13 pKa = 3.78RR14 pKa = 11.84LMLRR18 pKa = 11.84KK19 pKa = 8.35QTADD23 pKa = 2.91VGLIKK28 pKa = 10.53VVNLISRR35 pKa = 11.84ATHH38 pKa = 5.52GAVFGGRR45 pKa = 11.84LGFICAAIKK54 pKa = 10.24QDD56 pKa = 3.25GANIRR61 pKa = 11.84SLSTWEE67 pKa = 4.86AYY69 pKa = 9.18GQVYY73 pKa = 10.82DD74 pKa = 4.53SVTTMAIIHH83 pKa = 6.32

Molecular weight: 9.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

57

0

57

13737

58

1416

241.0

26.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.964 ± 0.47

0.903 ± 0.157

6.435 ± 0.295

6.857 ± 0.331

3.822 ± 0.145

7.76 ± 0.625

1.434 ± 0.173

5.54 ± 0.194

6.231 ± 0.341

7.36 ± 0.299

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.715 ± 0.199

4.826 ± 0.221

3.938 ± 0.35

4.171 ± 0.366

4.805 ± 0.262

6.391 ± 0.268

6.341 ± 0.281

7.192 ± 0.337

1.478 ± 0.121

3.836 ± 0.175
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski