Pycnoporus cinnabarinus (Cinnabar-red polypore) (Trametes cinnabarina)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Polyporaceae; Trametes

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10180 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A060SKN8|A0A060SKN8_PYCCI Uncharacterized protein OS=Pycnoporus cinnabarinus OX=5643 GN=BN946_scf185010.g7 PE=4 SV=1
MM1 pKa = 7.65RR2 pKa = 11.84PASFFALLAMCITVQALPIAFTLADD27 pKa = 3.7VSAGTLTSEE36 pKa = 4.59GLFSTALSPVATSSPVAPTDD56 pKa = 3.5SVSDD60 pKa = 3.96VNSTAAIPTASTTDD74 pKa = 3.38TSSDD78 pKa = 3.49PASTDD83 pKa = 3.18NANGASQTDD92 pKa = 3.73PSIASATDD100 pKa = 3.73DD101 pKa = 3.98GSSDD105 pKa = 3.24ASSTVVTDD113 pKa = 4.15SSASPSSTATGDD125 pKa = 3.29RR126 pKa = 11.84ATGTDD131 pKa = 3.55SPTSSAAQPTSTSVSFDD148 pKa = 3.26IPVVPPACLALASGAQTTSLPTSTIASTAFTTLPPSGSSSLSNNTIISTIASNATATPSVTGSSAVSALPTDD220 pKa = 3.85VASNGTLSRR229 pKa = 11.84RR230 pKa = 11.84IAQDD234 pKa = 3.32DD235 pKa = 4.22LPAVAQAWQDD245 pKa = 3.35LCLVSGGDD253 pKa = 2.91IFTNEE258 pKa = 4.2PCVQLAGVNGINALLAHH275 pKa = 7.57ADD277 pKa = 3.45PCAQQDD283 pKa = 3.75NADD286 pKa = 3.63AMIDD290 pKa = 3.8FAKK293 pKa = 10.81SPGVTNSAALIANAVAYY310 pKa = 8.63RR311 pKa = 11.84QHH313 pKa = 6.58PRR315 pKa = 11.84NVLDD319 pKa = 3.4ISGVLPSTPFCQRR332 pKa = 11.84APRR335 pKa = 11.84NAEE338 pKa = 3.53LAGVVNGQLDD348 pKa = 3.89GLNAGIFGSVGVGLFAFGADD368 pKa = 4.08GSCPFGQVPDD378 pKa = 4.57DD379 pKa = 4.0TTCTCSS385 pKa = 2.97

Molecular weight: 38.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A060SJX4|A0A060SJX4_PYCCI Macro domain-containing protein OS=Pycnoporus cinnabarinus OX=5643 GN=BN946_scf184979.g41 PE=4 SV=1
LL1 pKa = 6.5SQQMNPLMRR10 pKa = 11.84APRR13 pKa = 11.84SQLAARR19 pKa = 11.84RR20 pKa = 11.84FHH22 pKa = 5.19QHH24 pKa = 6.2HH25 pKa = 7.69LIQTHH30 pKa = 6.26LRR32 pKa = 11.84PTPSPLPPHH41 pKa = 5.26ATEE44 pKa = 4.59RR45 pKa = 11.84LLAGKK50 pKa = 9.87GGRR53 pKa = 11.84LHH55 pKa = 7.13RR56 pKa = 11.84PLSPKK61 pKa = 8.57IWKK64 pKa = 8.37WLPPRR69 pKa = 11.84PMLRR73 pKa = 11.84RR74 pKa = 11.84LRR76 pKa = 11.84HH77 pKa = 4.01QTRR80 pKa = 11.84GAPALHH86 pKa = 6.4VVAAWALARR95 pKa = 11.84QTGSRR100 pKa = 3.76

Molecular weight: 11.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10180

0

10180

4930602

28

5011

484.3

53.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.526 ± 0.025

1.126 ± 0.009

5.72 ± 0.016

6.085 ± 0.026

3.534 ± 0.014

6.398 ± 0.02

2.623 ± 0.011

4.41 ± 0.019

4.333 ± 0.02

9.117 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.982 ± 0.008

3.077 ± 0.012

6.986 ± 0.03

3.748 ± 0.016

6.589 ± 0.023

8.349 ± 0.033

5.816 ± 0.016

6.413 ± 0.017

1.397 ± 0.009

2.633 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski