Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_82

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.0AlaAla: 0.0 ± 0.0
0.577AlaCys: 0.577 ± 0.466
3.462AlaAsp: 3.462 ± 0.788
1.731AlaGlu: 1.731 ± 1.413
1.154AlaPhe: 1.154 ± 0.434
1.154AlaGly: 1.154 ± 0.524
1.154AlaHis: 1.154 ± 0.524
2.885AlaIle: 2.885 ± 0.768
2.885AlaLys: 2.885 ± 1.226
8.656AlaLeu: 8.656 ± 1.411
0.577AlaMet: 0.577 ± 0.53
6.924AlaAsn: 6.924 ± 2.522
0.577AlaPro: 0.577 ± 0.471
4.616AlaGln: 4.616 ± 1.445
2.308AlaArg: 2.308 ± 1.296
4.039AlaSer: 4.039 ± 0.888
4.039AlaThr: 4.039 ± 0.75
2.885AlaVal: 2.885 ± 1.509
0.0AlaTrp: 0.0 ± 0.0
3.462AlaTyr: 3.462 ± 0.974
0.0AlaXaa: 0.0 ± 0.0
Cys
0.577CysAla: 0.577 ± 0.471
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.154CysGlu: 1.154 ± 0.434
0.577CysPhe: 0.577 ± 0.466
1.154CysGly: 1.154 ± 0.434
1.154CysHis: 1.154 ± 1.364
1.154CysIle: 1.154 ± 1.031
2.308CysLys: 2.308 ± 0.555
1.154CysLeu: 1.154 ± 0.434
0.0CysMet: 0.0 ± 0.0
0.577CysAsn: 0.577 ± 0.466
1.154CysPro: 1.154 ± 0.76
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.154CysSer: 1.154 ± 0.76
1.154CysThr: 1.154 ± 0.434
1.154CysVal: 1.154 ± 0.434
0.0CysTrp: 0.0 ± 0.0
1.154CysTyr: 1.154 ± 0.933
0.0CysXaa: 0.0 ± 0.0
Asp
2.308AspAla: 2.308 ± 0.717
1.731AspCys: 1.731 ± 0.689
1.154AspAsp: 1.154 ± 0.864
1.731AspGlu: 1.731 ± 1.004
5.77AspPhe: 5.77 ± 1.441
0.0AspGly: 0.0 ± 0.0
0.0AspHis: 0.0 ± 0.0
8.656AspIle: 8.656 ± 3.486
4.039AspLys: 4.039 ± 2.122
4.616AspLeu: 4.616 ± 1.145
1.154AspMet: 1.154 ± 0.434
6.347AspAsn: 6.347 ± 1.326
2.308AspPro: 2.308 ± 0.528
0.0AspGln: 0.0 ± 0.0
0.577AspArg: 0.577 ± 0.466
2.885AspSer: 2.885 ± 0.943
3.462AspThr: 3.462 ± 1.48
4.039AspVal: 4.039 ± 0.758
0.0AspTrp: 0.0 ± 0.0
4.616AspTyr: 4.616 ± 1.166
0.0AspXaa: 0.0 ± 0.0
Glu
1.731GluAla: 1.731 ± 0.943
0.0GluCys: 0.0 ± 0.0
4.616GluAsp: 4.616 ± 1.102
5.193GluGlu: 5.193 ± 1.076
4.039GluPhe: 4.039 ± 0.49
1.154GluGly: 1.154 ± 0.942
3.462GluHis: 3.462 ± 1.682
3.462GluIle: 3.462 ± 0.982
4.616GluLys: 4.616 ± 1.735
5.193GluLeu: 5.193 ± 1.033
1.154GluMet: 1.154 ± 0.815
6.924GluAsn: 6.924 ± 2.262
0.0GluPro: 0.0 ± 0.0
3.462GluGln: 3.462 ± 1.762
2.885GluArg: 2.885 ± 0.729
2.308GluSer: 2.308 ± 1.152
0.577GluThr: 0.577 ± 0.53
1.731GluVal: 1.731 ± 0.704
0.0GluTrp: 0.0 ± 0.0
1.731GluTyr: 1.731 ± 1.399
0.0GluXaa: 0.0 ± 0.0
Phe
2.308PheAla: 2.308 ± 0.555
1.154PheCys: 1.154 ± 0.933
7.501PheAsp: 7.501 ± 2.567
1.154PheGlu: 1.154 ± 0.576
1.731PhePhe: 1.731 ± 0.776
2.308PheGly: 2.308 ± 0.868
1.731PheHis: 1.731 ± 1.399
2.885PheIle: 2.885 ± 1.226
4.039PheLys: 4.039 ± 1.689
1.731PheLeu: 1.731 ± 0.768
0.577PheMet: 0.577 ± 0.466
4.616PheAsn: 4.616 ± 0.667
2.308PhePro: 2.308 ± 1.194
2.885PheGln: 2.885 ± 1.488
4.039PheArg: 4.039 ± 1.392
5.193PheSer: 5.193 ± 1.662
5.193PheThr: 5.193 ± 1.558
1.154PheVal: 1.154 ± 0.434
0.577PheTrp: 0.577 ± 0.466
4.039PheTyr: 4.039 ± 1.904
0.0PheXaa: 0.0 ± 0.0
Gly
2.885GlyAla: 2.885 ± 0.782
0.0GlyCys: 0.0 ± 0.0
1.154GlyAsp: 1.154 ± 0.942
1.154GlyGlu: 1.154 ± 0.933
4.039GlyPhe: 4.039 ± 1.569
1.731GlyGly: 1.731 ± 0.765
1.731GlyHis: 1.731 ± 1.413
2.885GlyIle: 2.885 ± 0.692
0.577GlyLys: 0.577 ± 0.466
4.039GlyLeu: 4.039 ± 1.714
1.731GlyMet: 1.731 ± 0.843
3.462GlyAsn: 3.462 ± 0.727
0.577GlyPro: 0.577 ± 0.466
1.731GlyGln: 1.731 ± 0.272
0.0GlyArg: 0.0 ± 0.0
2.885GlySer: 2.885 ± 1.047
1.731GlyThr: 1.731 ± 0.272
2.308GlyVal: 2.308 ± 1.659
0.0GlyTrp: 0.0 ± 0.0
4.616GlyTyr: 4.616 ± 1.646
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.577HisCys: 0.577 ± 0.682
1.154HisAsp: 1.154 ± 0.784
0.577HisGlu: 0.577 ± 0.53
2.308HisPhe: 2.308 ± 1.498
1.154HisGly: 1.154 ± 0.784
1.731HisHis: 1.731 ± 0.768
2.308HisIle: 2.308 ± 0.868
2.308HisLys: 2.308 ± 0.824
2.308HisLeu: 2.308 ± 1.866
0.577HisMet: 0.577 ± 0.682
1.154HisAsn: 1.154 ± 0.784
1.731HisPro: 1.731 ± 0.776
0.577HisGln: 0.577 ± 0.466
0.0HisArg: 0.0 ± 0.0
1.731HisSer: 1.731 ± 1.399
0.0HisThr: 0.0 ± 0.0
1.731HisVal: 1.731 ± 1.099
0.0HisTrp: 0.0 ± 0.0
1.154HisTyr: 1.154 ± 0.933
0.0HisXaa: 0.0 ± 0.0
Ile
4.616IleAla: 4.616 ± 0.562
0.577IleCys: 0.577 ± 0.471
2.308IleAsp: 2.308 ± 1.296
2.308IleGlu: 2.308 ± 1.296
3.462IlePhe: 3.462 ± 1.301
4.039IleGly: 4.039 ± 0.816
1.731IleHis: 1.731 ± 0.689
2.885IleIle: 2.885 ± 0.928
3.462IleLys: 3.462 ± 1.443
5.193IleLeu: 5.193 ± 2.018
0.577IleMet: 0.577 ± 0.471
5.193IleAsn: 5.193 ± 1.956
4.039IlePro: 4.039 ± 1.614
2.308IleGln: 2.308 ± 0.722
1.731IleArg: 1.731 ± 0.768
5.193IleSer: 5.193 ± 0.788
4.616IleThr: 4.616 ± 0.785
1.731IleVal: 1.731 ± 0.272
0.0IleTrp: 0.0 ± 0.0
5.77IleTyr: 5.77 ± 0.812
0.0IleXaa: 0.0 ± 0.0
Lys
5.193LysAla: 5.193 ± 1.44
1.154LysCys: 1.154 ± 0.434
2.308LysAsp: 2.308 ± 0.868
4.039LysGlu: 4.039 ± 1.368
4.616LysPhe: 4.616 ± 1.533
2.308LysGly: 2.308 ± 0.717
2.308LysHis: 2.308 ± 1.194
3.462LysIle: 3.462 ± 1.734
4.039LysLys: 4.039 ± 1.377
7.501LysLeu: 7.501 ± 2.434
1.154LysMet: 1.154 ± 0.857
5.193LysAsn: 5.193 ± 1.569
2.885LysPro: 2.885 ± 1.009
2.885LysGln: 2.885 ± 2.376
3.462LysArg: 3.462 ± 1.856
2.308LysSer: 2.308 ± 0.878
4.616LysThr: 4.616 ± 2.903
4.616LysVal: 4.616 ± 1.578
1.154LysTrp: 1.154 ± 0.524
4.039LysTyr: 4.039 ± 1.231
0.0LysXaa: 0.0 ± 0.0
Leu
5.77LeuAla: 5.77 ± 2.277
1.731LeuCys: 1.731 ± 0.272
5.193LeuAsp: 5.193 ± 0.692
5.77LeuGlu: 5.77 ± 2.307
6.347LeuPhe: 6.347 ± 2.43
4.039LeuGly: 4.039 ± 0.816
1.154LeuHis: 1.154 ± 0.434
2.885LeuIle: 2.885 ± 1.238
5.77LeuLys: 5.77 ± 1.926
9.233LeuLeu: 9.233 ± 2.031
0.577LeuMet: 0.577 ± 0.471
6.924LeuAsn: 6.924 ± 1.616
9.81LeuPro: 9.81 ± 4.361
6.347LeuGln: 6.347 ± 1.024
6.347LeuArg: 6.347 ± 1.635
9.233LeuSer: 9.233 ± 1.761
5.193LeuThr: 5.193 ± 0.984
3.462LeuVal: 3.462 ± 1.097
0.0LeuTrp: 0.0 ± 0.0
5.193LeuTyr: 5.193 ± 1.84
0.0LeuXaa: 0.0 ± 0.0
Met
1.154MetAla: 1.154 ± 0.942
0.577MetCys: 0.577 ± 0.682
0.577MetAsp: 0.577 ± 0.471
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
0.577MetGly: 0.577 ± 0.53
0.0MetHis: 0.0 ± 0.0
0.577MetIle: 0.577 ± 0.53
1.731MetLys: 1.731 ± 0.768
0.577MetLeu: 0.577 ± 0.53
0.577MetMet: 0.577 ± 0.471
0.577MetAsn: 0.577 ± 0.783
1.154MetPro: 1.154 ± 0.942
3.462MetGln: 3.462 ± 1.456
0.0MetArg: 0.0 ± 0.0
1.731MetSer: 1.731 ± 0.704
0.577MetThr: 0.577 ± 0.471
1.731MetVal: 1.731 ± 0.781
0.577MetTrp: 0.577 ± 0.53
1.154MetTyr: 1.154 ± 0.933
0.0MetXaa: 0.0 ± 0.0
Asn
4.039AsnAla: 4.039 ± 1.11
0.577AsnCys: 0.577 ± 0.466
5.77AsnAsp: 5.77 ± 1.899
6.347AsnGlu: 6.347 ± 3.037
4.616AsnPhe: 4.616 ± 1.154
4.616AsnGly: 4.616 ± 0.911
0.0AsnHis: 0.0 ± 0.0
8.078AsnIle: 8.078 ± 2.217
7.501AsnLys: 7.501 ± 0.991
9.233AsnLeu: 9.233 ± 1.596
1.154AsnMet: 1.154 ± 0.524
5.77AsnAsn: 5.77 ± 0.966
4.616AsnPro: 4.616 ± 1.321
4.616AsnGln: 4.616 ± 3.522
4.039AsnArg: 4.039 ± 1.11
8.078AsnSer: 8.078 ± 1.827
2.885AsnThr: 2.885 ± 1.43
3.462AsnVal: 3.462 ± 1.443
0.0AsnTrp: 0.0 ± 0.0
4.039AsnTyr: 4.039 ± 0.622
0.0AsnXaa: 0.0 ± 0.0
Pro
1.731ProAla: 1.731 ± 1.399
1.154ProCys: 1.154 ± 0.76
2.885ProAsp: 2.885 ± 1.951
4.616ProGlu: 4.616 ± 1.393
3.462ProPhe: 3.462 ± 0.543
1.154ProGly: 1.154 ± 0.942
0.577ProHis: 0.577 ± 0.466
3.462ProIle: 3.462 ± 1.181
3.462ProLys: 3.462 ± 0.92
3.462ProLeu: 3.462 ± 0.788
0.0ProMet: 0.0 ± 0.0
2.885ProAsn: 2.885 ± 1.923
0.577ProPro: 0.577 ± 0.466
1.731ProGln: 1.731 ± 1.024
1.154ProArg: 1.154 ± 0.434
1.731ProSer: 1.731 ± 0.776
2.308ProThr: 2.308 ± 0.974
2.885ProVal: 2.885 ± 1.009
0.577ProTrp: 0.577 ± 0.471
3.462ProTyr: 3.462 ± 0.519
0.0ProXaa: 0.0 ± 0.0
Gln
3.462GlnAla: 3.462 ± 1.886
0.577GlnCys: 0.577 ± 0.466
4.039GlnAsp: 4.039 ± 2.111
2.308GlnGlu: 2.308 ± 0.555
2.885GlnPhe: 2.885 ± 1.238
2.308GlnGly: 2.308 ± 1.152
0.0GlnHis: 0.0 ± 0.0
2.885GlnIle: 2.885 ± 0.692
2.308GlnLys: 2.308 ± 0.974
6.347GlnLeu: 6.347 ± 2.592
1.154GlnMet: 1.154 ± 1.061
5.193GlnAsn: 5.193 ± 3.008
0.577GlnPro: 0.577 ± 0.783
4.616GlnGln: 4.616 ± 3.522
2.885GlnArg: 2.885 ± 0.768
1.731GlnSer: 1.731 ± 1.024
2.885GlnThr: 2.885 ± 1.238
2.308GlnVal: 2.308 ± 1.262
1.154GlnTrp: 1.154 ± 0.524
3.462GlnTyr: 3.462 ± 1.045
0.0GlnXaa: 0.0 ± 0.0
Arg
2.308ArgAla: 2.308 ± 0.509
1.154ArgCys: 1.154 ± 0.434
0.577ArgAsp: 0.577 ± 0.783
1.731ArgGlu: 1.731 ± 0.272
1.731ArgPhe: 1.731 ± 0.768
1.154ArgGly: 1.154 ± 0.942
1.154ArgHis: 1.154 ± 0.783
2.885ArgIle: 2.885 ± 0.729
2.308ArgLys: 2.308 ± 0.528
5.193ArgLeu: 5.193 ± 1.369
1.154ArgMet: 1.154 ± 0.562
3.462ArgAsn: 3.462 ± 2.211
1.154ArgPro: 1.154 ± 0.933
1.731ArgGln: 1.731 ± 1.004
0.577ArgArg: 0.577 ± 0.466
2.308ArgSer: 2.308 ± 1.134
3.462ArgThr: 3.462 ± 1.097
0.577ArgVal: 0.577 ± 0.53
0.0ArgTrp: 0.0 ± 0.0
1.731ArgTyr: 1.731 ± 1.413
0.0ArgXaa: 0.0 ± 0.0
Ser
4.039SerAla: 4.039 ± 2.248
1.154SerCys: 1.154 ± 0.434
2.308SerAsp: 2.308 ± 0.717
4.039SerGlu: 4.039 ± 1.396
2.308SerPhe: 2.308 ± 0.555
2.308SerGly: 2.308 ± 1.057
2.308SerHis: 2.308 ± 0.878
5.193SerIle: 5.193 ± 2.077
6.347SerLys: 6.347 ± 1.42
8.078SerLeu: 8.078 ± 2.294
0.577SerMet: 0.577 ± 0.429
4.039SerAsn: 4.039 ± 1.003
3.462SerPro: 3.462 ± 1.128
4.039SerGln: 4.039 ± 1.569
2.308SerArg: 2.308 ± 0.722
4.039SerSer: 4.039 ± 0.763
2.308SerThr: 2.308 ± 0.878
3.462SerVal: 3.462 ± 1.309
0.0SerTrp: 0.0 ± 0.0
4.039SerTyr: 4.039 ± 1.274
0.0SerXaa: 0.0 ± 0.0
Thr
5.77ThrAla: 5.77 ± 1.08
0.577ThrCys: 0.577 ± 0.783
1.731ThrAsp: 1.731 ± 0.776
4.616ThrGlu: 4.616 ± 1.916
4.039ThrPhe: 4.039 ± 0.763
2.885ThrGly: 2.885 ± 2.012
1.154ThrHis: 1.154 ± 0.434
3.462ThrIle: 3.462 ± 0.813
1.731ThrLys: 1.731 ± 0.904
8.656ThrLeu: 8.656 ± 1.097
0.577ThrMet: 0.577 ± 0.466
5.193ThrAsn: 5.193 ± 1.075
1.731ThrPro: 1.731 ± 0.704
1.731ThrGln: 1.731 ± 1.059
1.731ThrArg: 1.731 ± 0.776
1.154ThrSer: 1.154 ± 0.784
2.885ThrThr: 2.885 ± 0.943
0.577ThrVal: 0.577 ± 0.471
0.577ThrTrp: 0.577 ± 0.471
3.462ThrTyr: 3.462 ± 1.534
0.0ThrXaa: 0.0 ± 0.0
Val
1.731ValAla: 1.731 ± 1.099
1.154ValCys: 1.154 ± 0.76
4.039ValAsp: 4.039 ± 1.396
1.731ValGlu: 1.731 ± 0.904
1.731ValPhe: 1.731 ± 0.768
1.731ValGly: 1.731 ± 1.061
0.577ValHis: 0.577 ± 0.682
0.0ValIle: 0.0 ± 0.0
2.308ValLys: 2.308 ± 1.618
5.193ValLeu: 5.193 ± 1.076
1.154ValMet: 1.154 ± 0.864
4.616ValAsn: 4.616 ± 2.079
3.462ValPro: 3.462 ± 0.788
2.885ValGln: 2.885 ± 2.012
1.154ValArg: 1.154 ± 0.933
4.039ValSer: 4.039 ± 1.751
2.885ValThr: 2.885 ± 0.626
0.0ValVal: 0.0 ± 0.0
0.0ValTrp: 0.0 ± 0.0
2.308ValTyr: 2.308 ± 0.904
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.577TrpAsp: 0.577 ± 0.471
1.154TrpGlu: 1.154 ± 0.524
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.577TrpMet: 0.577 ± 0.471
1.154TrpAsn: 1.154 ± 0.524
0.0TrpPro: 0.0 ± 0.0
0.577TrpGln: 0.577 ± 0.53
0.0TrpArg: 0.0 ± 0.0
1.731TrpSer: 1.731 ± 0.776
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.462TyrAla: 3.462 ± 2.123
1.154TyrCys: 1.154 ± 0.434
4.039TyrAsp: 4.039 ± 1.953
2.885TyrGlu: 2.885 ± 1.344
2.308TyrPhe: 2.308 ± 0.555
3.462TyrGly: 3.462 ± 1.401
1.154TyrHis: 1.154 ± 0.76
1.731TyrIle: 1.731 ± 1.024
7.501TyrLys: 7.501 ± 0.755
4.616TyrLeu: 4.616 ± 1.533
1.731TyrMet: 1.731 ± 0.386
9.233TyrAsn: 9.233 ± 2.124
1.154TyrPro: 1.154 ± 0.76
2.885TyrGln: 2.885 ± 1.157
1.154TyrArg: 1.154 ± 0.434
3.462TyrSer: 3.462 ± 0.813
3.462TyrThr: 3.462 ± 1.301
2.885TyrVal: 2.885 ± 1.759
1.154TyrTrp: 1.154 ± 0.942
2.308TyrTyr: 2.308 ± 0.868
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1734 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski