Carnation yellow fleck virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; unclassified Closteroviridae

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5IV73|V5IV73_9CLOS HSP70 OS=Carnation yellow fleck virus OX=940280 PE=3 SV=1
MM1 pKa = 7.19NAVEE5 pKa = 4.5FAQPKK10 pKa = 9.73EE11 pKa = 3.93FFKK14 pKa = 10.96ILLLKK19 pKa = 10.88DD20 pKa = 3.31FVFYY24 pKa = 10.44IVSIDD29 pKa = 3.52CHH31 pKa = 7.44AEE33 pKa = 3.91STAEE37 pKa = 3.95LAVVYY42 pKa = 10.2LQDD45 pKa = 4.5FDD47 pKa = 4.34LTFNRR52 pKa = 11.84KK53 pKa = 8.5GQVSSEE59 pKa = 3.95PFDD62 pKa = 3.84FEE64 pKa = 5.68NIVSKK69 pKa = 10.91LNPKK73 pKa = 8.47TLTYY77 pKa = 10.14TRR79 pKa = 11.84VRR81 pKa = 11.84SGDD84 pKa = 3.61TVGSQPVHH92 pKa = 6.79ALDD95 pKa = 4.0SDD97 pKa = 3.86SRR99 pKa = 11.84LLNRR103 pKa = 11.84EE104 pKa = 3.81VNFIFHH110 pKa = 6.35QNVKK114 pKa = 8.96LTFGLYY120 pKa = 10.54GEE122 pKa = 4.45EE123 pKa = 4.39QYY125 pKa = 11.08CVSSDD130 pKa = 3.39YY131 pKa = 11.39LQFGSKK137 pKa = 10.45FIGAHH142 pKa = 6.3CGTLSYY148 pKa = 11.07CLLRR152 pKa = 11.84EE153 pKa = 4.1LDD155 pKa = 3.81SDD157 pKa = 3.96NKK159 pKa = 10.44NLVVGTFCAA168 pKa = 3.94

Molecular weight: 19.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5IV68|V5IV68_9CLOS p17 OS=Carnation yellow fleck virus OX=940280 PE=4 SV=1
MM1 pKa = 7.79DD2 pKa = 4.88CVLRR6 pKa = 11.84SYY8 pKa = 11.44LLLAFGFLICLFLFCLVVFVWFVYY32 pKa = 10.53RR33 pKa = 11.84NVLSVTPQSPTNTQRR48 pKa = 11.84TAVVV52 pKa = 3.13

Molecular weight: 6.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

5119

52

2664

568.8

64.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.193 ± 0.381

2.325 ± 0.226

4.981 ± 0.289

6.017 ± 0.433

6.505 ± 0.51

4.923 ± 0.421

1.66 ± 0.234

4.2 ± 0.266

5.919 ± 0.381

11.037 ± 0.325

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.231 ± 0.292

4.708 ± 0.518

3.79 ± 0.351

2.032 ± 0.232

6.388 ± 0.672

10.334 ± 0.723

5.821 ± 0.351

7.775 ± 0.6

0.508 ± 0.11

3.653 ± 0.345
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski