Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) (BEC)
Average proteome isoelectric point is 7.88
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) OX=331642 GN=ORF1 PE=3 SV=1
MM1 pKa = 7.43 APVVSRR7 pKa = 11.84 DD8 pKa = 3.29 RR9 pKa = 11.84 HH10 pKa = 4.11 RR11 pKa = 11.84 HH12 pKa = 5.63 KK13 pKa = 10.38 IPKK16 pKa = 8.17 PHH18 pKa = 6.3 QPAPPHH24 pKa = 6.81 RR25 pKa = 11.84 CTVWCPEE32 pKa = 3.72 DD33 pKa = 3.74 CGWYY37 pKa = 9.97 VGRR40 pKa = 11.84 CSCPKK45 pKa = 8.84 SCQRR49 pKa = 11.84 EE50 pKa = 4.0 GWDD53 pKa = 3.86 DD54 pKa = 4.16 FFVADD59 pKa = 3.92 KK60 pKa = 10.66 VKK62 pKa = 10.15 PPSYY66 pKa = 9.86 VASKK70 pKa = 9.86 TSVADD75 pKa = 3.52 VVDD78 pKa = 3.67 WLLEE82 pKa = 4.06 EE83 pKa = 5.8 DD84 pKa = 4.48 PATDD88 pKa = 4.11 GPSEE92 pKa = 4.01 FDD94 pKa = 2.97 LTQFFQAYY102 pKa = 6.85 TDD104 pKa = 3.67 KK105 pKa = 11.0 SHH107 pKa = 7.0 QIHH110 pKa = 7.12 RR111 pKa = 11.84 DD112 pKa = 3.48 YY113 pKa = 11.66 APDD116 pKa = 3.45 QLAQALDD123 pKa = 3.41 MAYY126 pKa = 9.22 ILSVDD131 pKa = 3.82 PPDD134 pKa = 3.58 IKK136 pKa = 10.96 LPEE139 pKa = 4.06 YY140 pKa = 9.24 EE141 pKa = 4.13 ATRR144 pKa = 11.84 FTHH147 pKa = 5.56 DD148 pKa = 2.77 TSYY151 pKa = 10.93 KK152 pKa = 10.13 GKK154 pKa = 9.75 LPRR157 pKa = 11.84 WLRR160 pKa = 11.84 VYY162 pKa = 10.35 GFKK165 pKa = 10.6 SRR167 pKa = 11.84 EE168 pKa = 3.97 LAKK171 pKa = 10.67 KK172 pKa = 10.39 AITNIKK178 pKa = 9.86 GGAHH182 pKa = 5.55 WAKK185 pKa = 10.88 GLFKK189 pKa = 10.52 QAWDD193 pKa = 3.87 TLPGWSEE200 pKa = 3.76 VEE202 pKa = 4.33 AYY204 pKa = 10.2 FKK206 pKa = 11.26 AFFAGIITGVEE217 pKa = 4.06 DD218 pKa = 4.61 ALSKK222 pKa = 10.85 SPSSVWTSLKK232 pKa = 9.45 LTPLLYY238 pKa = 9.53 IWRR241 pKa = 11.84 NINEE245 pKa = 4.24 CSDD248 pKa = 3.25 IPVILGAFWATLEE261 pKa = 4.73 LYY263 pKa = 10.36 NIPSKK268 pKa = 11.26 VYY270 pKa = 10.61 DD271 pKa = 3.99 LVSTALGPMVQDD283 pKa = 3.85 LARR286 pKa = 11.84 RR287 pKa = 11.84 VINIIKK293 pKa = 10.42 GDD295 pKa = 3.77 GNGPKK300 pKa = 9.61 QEE302 pKa = 3.97 GGRR305 pKa = 11.84 PSFSIPGVLLATFLSAIILGSMPSDD330 pKa = 4.31 GIIKK334 pKa = 10.18 KK335 pKa = 8.32 VLRR338 pKa = 11.84 GCATAAGLVGGFNAVKK354 pKa = 10.5 SIITTVQGASACKK367 pKa = 9.8 DD368 pKa = 3.58 VKK370 pKa = 10.84 KK371 pKa = 10.5 LASQLMCVTTMAATVSTRR389 pKa = 11.84 GEE391 pKa = 4.14 RR392 pKa = 11.84 QVLASMLNDD401 pKa = 3.27 LNEE404 pKa = 4.38 SVRR407 pKa = 11.84 EE408 pKa = 3.96 RR409 pKa = 11.84 LVDD412 pKa = 3.43 PAFAALVPQLSAMSSKK428 pKa = 10.3 IMEE431 pKa = 4.95 LSTINAAALSAARR444 pKa = 11.84 KK445 pKa = 8.8 RR446 pKa = 11.84 VPAKK450 pKa = 10.17 IVVLCGPPGHH460 pKa = 6.4 GKK462 pKa = 9.69 SVAAHH467 pKa = 6.94 KK468 pKa = 9.41 LAKK471 pKa = 9.22 MLNPNEE477 pKa = 3.89 PSIWNPFSDD486 pKa = 3.66 HH487 pKa = 6.53 HH488 pKa = 7.84 DD489 pKa = 3.61 EE490 pKa = 4.21 YY491 pKa = 10.61 TAEE494 pKa = 4.14 DD495 pKa = 3.82 VVIIDD500 pKa = 4.12 EE501 pKa = 4.61 TPAEE505 pKa = 4.29 PGQWVEE511 pKa = 4.91 DD512 pKa = 4.59 LIAMGSNSPFVPNYY526 pKa = 10.59 DD527 pKa = 2.85 RR528 pKa = 11.84 VEE530 pKa = 4.03 NKK532 pKa = 8.24 TRR534 pKa = 11.84 CFDD537 pKa = 3.45 SKK539 pKa = 11.42 YY540 pKa = 11.29 VLITTNHH547 pKa = 5.92 NPLINPTHH555 pKa = 6.29 SRR557 pKa = 11.84 AAALARR563 pKa = 11.84 RR564 pKa = 11.84 LTWVYY569 pKa = 11.17 VNSPDD574 pKa = 3.43 VADD577 pKa = 5.6 FLRR580 pKa = 11.84 QHH582 pKa = 6.84 PGVAPPATLFKK593 pKa = 10.76 ADD595 pKa = 4.01 CSHH598 pKa = 7.03 LNFDD602 pKa = 3.5 IHH604 pKa = 7.11 PYY606 pKa = 10.55 NSIGTTAVVGHH617 pKa = 6.72 NGTTPLPRR625 pKa = 11.84 AKK627 pKa = 9.43 RR628 pKa = 11.84 TSLEE632 pKa = 4.08 GLCKK636 pKa = 10.15 HH637 pKa = 6.52 IKK639 pKa = 9.99 DD640 pKa = 3.79 LPDD643 pKa = 3.95 RR644 pKa = 11.84 EE645 pKa = 4.52 GPPDD649 pKa = 3.93 GVPEE653 pKa = 4.1 RR654 pKa = 11.84 MVLVAPDD661 pKa = 3.31 KK662 pKa = 9.2 GTARR666 pKa = 11.84 FVEE669 pKa = 4.41 AVINTYY675 pKa = 10.64 HH676 pKa = 6.94 NSGLVAQPAAWDD688 pKa = 3.82 TTPQKK693 pKa = 10.79 YY694 pKa = 9.09 QLAVTWQGSTSSVVGQRR711 pKa = 11.84 WDD713 pKa = 4.25 CNPQTPFVAPHH724 pKa = 5.49 FTRR727 pKa = 11.84 NMFKK731 pKa = 10.31 RR732 pKa = 11.84 VLGTEE737 pKa = 3.89 VPEE740 pKa = 4.08 YY741 pKa = 10.74 HH742 pKa = 6.67 LLAYY746 pKa = 9.79 ACRR749 pKa = 11.84 ITSSSLGDD757 pKa = 3.4 KK758 pKa = 10.34 SLPVPNPTVVINDD771 pKa = 4.15 PSPTRR776 pKa = 11.84 LALALMRR783 pKa = 11.84 HH784 pKa = 6.28 LKK786 pKa = 10.69 NPIASGLRR794 pKa = 11.84 VVWDD798 pKa = 4.06 LFRR801 pKa = 11.84 GCATGPKK808 pKa = 9.91 RR809 pKa = 11.84 LFTWALSQEE818 pKa = 4.45 WNPMPVTTAFTFPAGTVILHH838 pKa = 5.53 TAGGVRR844 pKa = 11.84 VVVLPPGPQFGLTEE858 pKa = 4.16 VTHH861 pKa = 6.59 LADD864 pKa = 5.29 HH865 pKa = 6.94 SGQDD869 pKa = 3.82 DD870 pKa = 3.95 PVVPDD875 pKa = 3.76 MFGQTWTEE883 pKa = 3.89 LLWRR887 pKa = 11.84 LLKK890 pKa = 11.07 VIGTFLANYY899 pKa = 8.59 GVAIAGLTLSIAAFKK914 pKa = 9.21 TANKK918 pKa = 8.47 STRR921 pKa = 11.84 NDD923 pKa = 3.3 RR924 pKa = 11.84 QGWLSGSGVALSDD937 pKa = 3.58 EE938 pKa = 5.32 EE939 pKa = 4.16 YY940 pKa = 10.99 DD941 pKa = 3.2 EE942 pKa = 4.02 WMKK945 pKa = 10.9 YY946 pKa = 8.28 SKK948 pKa = 10.94 KK949 pKa = 10.07 KK950 pKa = 9.77 GKK952 pKa = 9.92 KK953 pKa = 8.61 INADD957 pKa = 3.13 EE958 pKa = 4.09 FLQLRR963 pKa = 11.84 HH964 pKa = 5.92 RR965 pKa = 11.84 AAMGNDD971 pKa = 3.46 DD972 pKa = 5.68 DD973 pKa = 5.29 DD974 pKa = 5.3 ARR976 pKa = 11.84 DD977 pKa = 3.52 YY978 pKa = 11.46 RR979 pKa = 11.84 SFYY982 pKa = 9.95 TAYY985 pKa = 10.3 QLGRR989 pKa = 11.84 EE990 pKa = 4.44 GNNCEE995 pKa = 5.02 DD996 pKa = 4.54 LPLHH1000 pKa = 6.29 PAVGPTTGGGYY1011 pKa = 9.53 YY1012 pKa = 9.3 VHH1014 pKa = 7.3 IGNGVGITLKK1024 pKa = 10.49 HH1025 pKa = 5.16 VASGEE1030 pKa = 4.12 DD1031 pKa = 3.57 VIKK1034 pKa = 10.69 EE1035 pKa = 4.0 LGNDD1039 pKa = 3.49 LVKK1042 pKa = 10.49 IRR1044 pKa = 11.84 ARR1046 pKa = 11.84 HH1047 pKa = 5.49 HH1048 pKa = 6.66 KK1049 pKa = 9.53 MGDD1052 pKa = 2.99 PAMVVGEE1059 pKa = 4.16 GAPVKK1064 pKa = 10.24 FVTGHH1069 pKa = 6.17 LVVDD1073 pKa = 4.3 ARR1075 pKa = 11.84 NEE1077 pKa = 4.35 SVVFDD1082 pKa = 3.52 QTRR1085 pKa = 11.84 LSVVRR1090 pKa = 11.84 VKK1092 pKa = 11.06 VPGLEE1097 pKa = 4.15 TQRR1100 pKa = 11.84 GYY1102 pKa = 11.27 CGLPYY1107 pKa = 10.43 VNSAGHH1113 pKa = 5.79 VVGLHH1118 pKa = 4.8 QGSYY1122 pKa = 10.73 GVGDD1126 pKa = 3.74 KK1127 pKa = 11.08 VFTPITDD1134 pKa = 3.68 APAASPDD1141 pKa = 3.62 TIMWRR1146 pKa = 11.84 GLEE1149 pKa = 4.17 CTRR1152 pKa = 11.84 SDD1154 pKa = 3.08 IVTHH1158 pKa = 6.6 LPHH1161 pKa = 5.79 GTKK1164 pKa = 10.6 YY1165 pKa = 10.73 SISPGMRR1172 pKa = 11.84 EE1173 pKa = 3.8 EE1174 pKa = 3.97 AHH1176 pKa = 6.74 KK1177 pKa = 9.88 CTHH1180 pKa = 5.8 QPASLGRR1187 pKa = 11.84 NDD1189 pKa = 3.62 PRR1191 pKa = 11.84 CNQTQVAMVVKK1202 pKa = 10.55 ALTPYY1207 pKa = 9.6 TSAPAIEE1214 pKa = 4.94 KK1215 pKa = 10.39 LDD1217 pKa = 3.8 PCMVAAITEE1226 pKa = 4.2 VRR1228 pKa = 11.84 TAIQSLTPKK1237 pKa = 10.49 GGFRR1241 pKa = 11.84 PLTFAAAWQSLDD1253 pKa = 3.39 LSTSAGALAPGKK1265 pKa = 8.15 TKK1267 pKa = 10.42 RR1268 pKa = 11.84 DD1269 pKa = 3.33 LCDD1272 pKa = 4.51 PDD1274 pKa = 3.38 TGMPAGKK1281 pKa = 9.78 YY1282 pKa = 9.6 RR1283 pKa = 11.84 EE1284 pKa = 4.12 MLLAAWSRR1292 pKa = 11.84 AGTGTPLDD1300 pKa = 3.4 HH1301 pKa = 6.95 TYY1303 pKa = 10.48 IVALKK1308 pKa = 10.7 DD1309 pKa = 3.22 EE1310 pKa = 4.73 LRR1312 pKa = 11.84 PVEE1315 pKa = 4.73 KK1316 pKa = 10.49 VAEE1319 pKa = 4.59 GKK1321 pKa = 10.19 RR1322 pKa = 11.84 RR1323 pKa = 11.84 LIWGADD1329 pKa = 3.05 ARR1331 pKa = 11.84 VALIASAALTPVANALKK1348 pKa = 9.53 TVTNLLPIQVGVDD1361 pKa = 3.47 PSSANCVSSWVGRR1374 pKa = 11.84 LQRR1377 pKa = 11.84 HH1378 pKa = 5.11 DD1379 pKa = 3.66 HH1380 pKa = 6.31 CLEE1383 pKa = 4.13 LDD1385 pKa = 3.53 YY1386 pKa = 11.52 SKK1388 pKa = 10.58 WDD1390 pKa = 3.46 STMSPVIINIAIDD1403 pKa = 3.72 ILCNTCGSDD1412 pKa = 3.76 SLRR1415 pKa = 11.84 MAVAQTLKK1423 pKa = 10.64 SRR1425 pKa = 11.84 PTALVEE1431 pKa = 4.43 GVSVPTKK1438 pKa = 10.48 SGLPSGMPFTSQINSIVHH1456 pKa = 6.3 WILWSATVRR1465 pKa = 11.84 KK1466 pKa = 9.81 CSLPLHH1472 pKa = 6.27 IGSVNEE1478 pKa = 3.86 LAPFLTYY1485 pKa = 10.97 GDD1487 pKa = 4.65 DD1488 pKa = 3.8 GLYY1491 pKa = 9.79 TIPSHH1496 pKa = 5.16 LTKK1499 pKa = 10.74 SIDD1502 pKa = 3.94 EE1503 pKa = 4.93 IISTLKK1509 pKa = 10.9 GYY1511 pKa = 10.11 GLSPTAPDD1519 pKa = 2.81 KK1520 pKa = 11.09 GANVEE1525 pKa = 4.08 IKK1527 pKa = 9.4 RR1528 pKa = 11.84 TSFTYY1533 pKa = 10.56 LSGPVFLKK1541 pKa = 10.52 RR1542 pKa = 11.84 RR1543 pKa = 11.84 IVLTPGGHH1551 pKa = 6.83 RR1552 pKa = 11.84 ALLDD1556 pKa = 3.54 LTSLARR1562 pKa = 11.84 QPVWVNGPRR1571 pKa = 11.84 RR1572 pKa = 11.84 SVWNHH1577 pKa = 4.67 EE1578 pKa = 4.07 AQPIEE1583 pKa = 4.04 IDD1585 pKa = 3.29 AEE1587 pKa = 4.2 TRR1589 pKa = 11.84 TIQLQNVLIEE1599 pKa = 4.56 LAWHH1603 pKa = 5.62 QPQDD1607 pKa = 3.69 FDD1609 pKa = 4.16 HH1610 pKa = 6.74 VLALVVKK1617 pKa = 9.64 SAEE1620 pKa = 4.15 ASGLTIPRR1628 pKa = 11.84 YY1629 pKa = 8.21 SQEE1632 pKa = 3.96 EE1633 pKa = 3.53 ARR1635 pKa = 11.84 AIYY1638 pKa = 9.76 DD1639 pKa = 3.03 GRR1641 pKa = 11.84 YY1642 pKa = 9.77 YY1643 pKa = 10.8 GIQHH1647 pKa = 6.09 VSLPNNSDD1655 pKa = 4.62 LIRR1658 pKa = 11.84 EE1659 pKa = 4.54 GNMSDD1664 pKa = 3.29 NKK1666 pKa = 9.86 STPEE1670 pKa = 3.76 QQHH1673 pKa = 5.44 EE1674 pKa = 4.42 SSRR1677 pKa = 11.84 AMDD1680 pKa = 4.16 AGATGAAAAAPAPPVAAAPASGLVGALVAEE1710 pKa = 4.6 PQSGPSAEE1718 pKa = 4.23 QWRR1721 pKa = 11.84 TAYY1724 pKa = 9.49 TLFGTVSWNANAGPGTILTVGRR1746 pKa = 11.84 LGPGMNPYY1754 pKa = 8.16 TQHH1757 pKa = 5.84 IAAMYY1762 pKa = 8.82 GGWAGGMDD1770 pKa = 3.59 IRR1772 pKa = 11.84 ITIAGSGFIGGTLAVAAIPPGVDD1795 pKa = 3.2 PEE1797 pKa = 4.64 SVNVLRR1803 pKa = 11.84 MPHH1806 pKa = 5.58 VLIDD1810 pKa = 3.63 ARR1812 pKa = 11.84 GGVPLEE1818 pKa = 4.07 VTLEE1822 pKa = 4.41 DD1823 pKa = 3.42 IRR1825 pKa = 11.84 TSLYY1829 pKa = 10.96 HH1830 pKa = 6.89 PMGDD1834 pKa = 3.3 TNTASLVIAVMTGLINPLGTDD1855 pKa = 3.53 TLSVTVQLEE1864 pKa = 4.29 TRR1866 pKa = 11.84 PGRR1869 pKa = 11.84 DD1870 pKa = 2.43 WVFFSLLPPTAGVASADD1887 pKa = 3.57 PSQLLTRR1894 pKa = 11.84 VALATSPEE1902 pKa = 4.0 VRR1904 pKa = 11.84 FGTGVLGILGLPSNPSVNRR1923 pKa = 11.84 VYY1925 pKa = 10.79 DD1926 pKa = 3.55 VQSRR1930 pKa = 11.84 TRR1932 pKa = 11.84 GWSFPIPSSSVFMGDD1947 pKa = 3.17 ARR1949 pKa = 11.84 NVEE1952 pKa = 4.15 HH1953 pKa = 6.77 NRR1955 pKa = 11.84 RR1956 pKa = 11.84 VMVQSSAPNNPLSDD1970 pKa = 3.79 VFPDD1974 pKa = 4.06 GFPDD1978 pKa = 5.1 FVPQSDD1984 pKa = 3.97 TEE1986 pKa = 4.21 PDD1988 pKa = 3.26 GGAVIAGQVLPHH2000 pKa = 7.06 PGDD2003 pKa = 3.48 NDD2005 pKa = 3.56 NFWRR2009 pKa = 11.84 LTPVVRR2015 pKa = 11.84 GNTTAAINTIPEE2027 pKa = 4.25 RR2028 pKa = 11.84 FNQVYY2033 pKa = 9.27 FINLADD2039 pKa = 4.03 EE2040 pKa = 4.56 EE2041 pKa = 4.57 AVSAATEE2048 pKa = 3.81 EE2049 pKa = 4.21 LRR2051 pKa = 11.84 FNGIQGIFGQRR2062 pKa = 11.84 TNARR2066 pKa = 11.84 AVQVMQGYY2074 pKa = 8.73 VPRR2077 pKa = 11.84 AEE2079 pKa = 4.66 HH2080 pKa = 7.29 IIRR2083 pKa = 11.84 PAGFAGVGPQGPNVPIGFAGTMPNFNATASGADD2116 pKa = 3.51 DD2117 pKa = 5.08 LVPVWGPTLVHH2128 pKa = 5.97 TASLLAGTTYY2138 pKa = 10.98 EE2139 pKa = 3.86 LAEE2142 pKa = 3.71 NSMYY2146 pKa = 10.58 VFSVSTSTSTFEE2158 pKa = 5.87 LGMLANGTWLGPAQLAGTGITWTEE2182 pKa = 4.11 VLSVTYY2188 pKa = 9.91 MGMRR2192 pKa = 11.84 FAYY2195 pKa = 10.27 NPLSGQGIGGEE2206 pKa = 4.25 SRR2208 pKa = 11.84 RR2209 pKa = 11.84 LL2210 pKa = 3.32
Molecular weight: 239.02 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 6.453
IPC2_protein 6.465
IPC_protein 6.517
Toseland 6.722
ProMoST 6.985
Dawson 6.942
Bjellqvist 6.956
Wikipedia 6.942
Rodwell 6.942
Grimsley 6.868
Solomon 6.942
Lehninger 6.942
Nozaki 7.263
DTASelect 7.351
Thurlkill 7.38
EMBOSS 7.366
Sillero 7.351
Patrickios 4.317
IPC_peptide 6.956
IPC2_peptide 7.044
IPC2.peptide.svr19 6.887
Protein with the highest isoelectric point:
>sp|Q288N7|POLG_BECN1 Genome polyprotein OS=Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) OX=331642 GN=ORF1 PE=3 SV=1
MM1 pKa = 7.59 ASAATAGLTLLSGGASIAADD21 pKa = 2.89 IASIVTEE28 pKa = 4.01 QQRR31 pKa = 11.84 LALQKK36 pKa = 9.97 EE37 pKa = 4.48 QIRR40 pKa = 11.84 NNYY43 pKa = 8.8 EE44 pKa = 3.61 LGKK47 pKa = 10.45 QSLSLQQQAMEE58 pKa = 4.17 NSRR61 pKa = 11.84 DD62 pKa = 3.89 RR63 pKa = 11.84 IRR65 pKa = 11.84 LSAAQIKK72 pKa = 9.92 EE73 pKa = 4.09 LGLDD77 pKa = 3.61 PKK79 pKa = 11.06 SEE81 pKa = 4.47 LNMLMGLTAGAQPPISTPISSEE103 pKa = 3.83 QLFLNSSNLARR114 pKa = 11.84 SVRR117 pKa = 11.84 WDD119 pKa = 2.97 ARR121 pKa = 11.84 NFGEE125 pKa = 5.54 AINTFAGLRR134 pKa = 11.84 AKK136 pKa = 10.33 HH137 pKa = 5.13 QANPNRR143 pKa = 11.84 PDD145 pKa = 3.17 MMLGSDD151 pKa = 3.79 NPNWGARR158 pKa = 11.84 ATGDD162 pKa = 3.56 ALSVSGLSVRR172 pKa = 11.84 SNHH175 pKa = 6.15 FGSGPSSLGSLSSVRR190 pKa = 11.84 SNPFSSISSGSVGGISLRR208 pKa = 11.84 TVGSRR213 pKa = 11.84 PSIRR217 pKa = 11.84 SVFSTTSVV225 pKa = 2.84
Molecular weight: 23.64 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.299
IPC2_protein 9.399
IPC_protein 10.131
Toseland 10.73
ProMoST 10.438
Dawson 10.774
Bjellqvist 10.482
Wikipedia 10.994
Rodwell 10.891
Grimsley 10.804
Solomon 10.965
Lehninger 10.921
Nozaki 10.701
DTASelect 10.482
Thurlkill 10.701
EMBOSS 11.14
Sillero 10.716
Patrickios 10.672
IPC_peptide 10.965
IPC2_peptide 9.136
IPC2.peptide.svr19 8.893
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
2
0
2
2435
225
2210
1217.5
131.33
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
9.651 ± 0.233
1.191 ± 0.486
5.092 ± 0.808
3.984 ± 0.175
2.998 ± 0.135
8.337 ± 0.225
2.464 ± 0.643
4.846 ± 0.199
3.696 ± 0.601
8.83 ± 0.749
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.094 ± 0.233
4.066 ± 0.88
7.187 ± 1.119
3.285 ± 0.835
5.421 ± 0.689
7.844 ± 3.69
6.899 ± 1.001
7.885 ± 1.585
1.889 ± 0.408
2.341 ± 0.774
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here