Acinetobacter phage AM106

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vieuvirus; unclassified Vieuvirus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A499Q7R7|A0A499Q7R7_9CAUD Uncharacterized protein OS=Acinetobacter phage AM106 OX=2163986 GN=AM106_45 PE=4 SV=1
MM1 pKa = 7.37VNTEE5 pKa = 5.06YY6 pKa = 11.1VPEE9 pKa = 4.28WYY11 pKa = 7.87ITPFQHH17 pKa = 5.72VQYY20 pKa = 10.04TLARR24 pKa = 11.84NQLHH28 pKa = 6.45MDD30 pKa = 4.46LLFEE34 pKa = 5.81DD35 pKa = 4.49MDD37 pKa = 4.21EE38 pKa = 4.61ADD40 pKa = 3.51QFLDD44 pKa = 3.35MGADD48 pKa = 3.5AQVSTFSDD56 pKa = 3.47GAYY59 pKa = 10.26AIVQIGDD66 pKa = 3.52TADD69 pKa = 3.25KK70 pKa = 11.21DD71 pKa = 3.87KK72 pKa = 11.17IQVYY76 pKa = 10.53GLLLHH81 pKa = 6.42EE82 pKa = 5.33AVHH85 pKa = 5.92VWQIVKK91 pKa = 10.35KK92 pKa = 10.43RR93 pKa = 11.84MGEE96 pKa = 4.06SEE98 pKa = 4.03PSVEE102 pKa = 4.16FEE104 pKa = 4.56AYY106 pKa = 10.09SIQAIAQDD114 pKa = 3.97LFEE117 pKa = 4.76MYY119 pKa = 9.14EE120 pKa = 3.87ASEE123 pKa = 4.31VSNGMEE129 pKa = 4.71GEE131 pKa = 4.2KK132 pKa = 10.63ADD134 pKa = 3.7

Molecular weight: 15.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A499Q7P4|A0A499Q7P4_9CAUD Uncharacterized protein OS=Acinetobacter phage AM106 OX=2163986 GN=AM106_04 PE=4 SV=1
MM1 pKa = 7.08THH3 pKa = 6.78FKK5 pKa = 10.28KK6 pKa = 10.2HH7 pKa = 5.75PDD9 pKa = 3.37GYY11 pKa = 11.13KK12 pKa = 10.38SFLGRR17 pKa = 11.84DD18 pKa = 3.51DD19 pKa = 3.9KK20 pKa = 11.62GLYY23 pKa = 8.82SVRR26 pKa = 11.84IGWQVYY32 pKa = 9.57ASNANGSVLYY42 pKa = 10.14KK43 pKa = 10.87VKK45 pKa = 10.91DD46 pKa = 3.8GVKK49 pKa = 9.28TPLNVFRR56 pKa = 11.84FRR58 pKa = 11.84TSYY61 pKa = 9.84PKK63 pKa = 10.28VWNEE67 pKa = 3.36LTQEE71 pKa = 3.45IDD73 pKa = 3.47FQRR76 pKa = 11.84RR77 pKa = 11.84KK78 pKa = 9.79QLAIKK83 pKa = 10.26LRR85 pKa = 11.84EE86 pKa = 4.24TNIPTYY92 pKa = 10.38DD93 pKa = 3.01RR94 pKa = 11.84KK95 pKa = 10.61AYY97 pKa = 7.93KK98 pKa = 9.58QKK100 pKa = 10.84RR101 pKa = 11.84GFTGSRR107 pKa = 3.24

Molecular weight: 12.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

16009

38

3489

228.7

25.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.207 ± 0.548

0.825 ± 0.162

5.484 ± 0.216

6.696 ± 0.632

3.573 ± 0.306

6.615 ± 0.301

1.518 ± 0.248

6.109 ± 0.217

7.09 ± 0.628

8.008 ± 0.319

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.255 ± 0.257

5.722 ± 0.476

3.448 ± 0.246

4.722 ± 0.271

4.216 ± 0.257

6.852 ± 0.689

6.59 ± 0.748

6.353 ± 0.18

1.306 ± 0.128

3.411 ± 0.209
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski