Caldithrix abyssi DSM 13497

Taxonomy: cellular organisms; Bacteria; Calditrichaeota; Calditrichia; Calditrichales; Calditrichaceae; Caldithrix; Caldithrix abyssi

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3674 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H1XP64|H1XP64_9BACT Amino acid adenylation domain protein OS=Caldithrix abyssi DSM 13497 OX=880073 GN=Cabys_1398 PE=4 SV=1
MM1 pKa = 7.14KK2 pKa = 9.69TRR4 pKa = 11.84IVILILGLATAILATTYY21 pKa = 8.31HH22 pKa = 6.33TLPFNGQNAFAPDD35 pKa = 3.55EE36 pKa = 4.37DD37 pKa = 5.7FITSTDD43 pKa = 3.3TVLAYY48 pKa = 7.5CTWDD52 pKa = 3.35DD53 pKa = 3.41QYY55 pKa = 11.93LYY57 pKa = 10.74LGLSSPFLATPNDD70 pKa = 4.05TARR73 pKa = 11.84GRR75 pKa = 11.84YY76 pKa = 9.58DD77 pKa = 3.49SFWYY81 pKa = 9.87IDD83 pKa = 3.96TDD85 pKa = 3.59PHH87 pKa = 6.64PDD89 pKa = 3.38NPKK92 pKa = 10.53SGLGTDD98 pKa = 3.22QTGSYY103 pKa = 9.68FIQINTSQPWWFDD116 pKa = 3.42EE117 pKa = 4.41QSWEE121 pKa = 4.11LPFFADD127 pKa = 3.23YY128 pKa = 10.84RR129 pKa = 11.84IIPRR133 pKa = 11.84YY134 pKa = 7.97YY135 pKa = 10.72KK136 pKa = 10.08KK137 pKa = 10.75DD138 pKa = 3.14SVYY141 pKa = 11.3ASFYY145 pKa = 11.06YY146 pKa = 10.4YY147 pKa = 10.82DD148 pKa = 3.83SDD150 pKa = 3.68SARR153 pKa = 11.84WFFRR157 pKa = 11.84GDD159 pKa = 2.96IDD161 pKa = 4.45TSLANLNYY169 pKa = 9.37IDD171 pKa = 4.74GYY173 pKa = 10.74YY174 pKa = 10.5EE175 pKa = 4.07LRR177 pKa = 11.84LPLDD181 pKa = 3.62SLNFPTDD188 pKa = 3.32INILGYY194 pKa = 10.39SVDD197 pKa = 4.21GQWEE201 pKa = 4.15SDD203 pKa = 3.64IYY205 pKa = 10.84WDD207 pKa = 4.72DD208 pKa = 3.64EE209 pKa = 4.67YY210 pKa = 11.73GFTRR214 pKa = 11.84DD215 pKa = 3.09VGGTFASWPWSSLVGGDD232 pKa = 3.98GDD234 pKa = 4.06YY235 pKa = 9.27HH236 pKa = 5.9TKK238 pKa = 10.8GKK240 pKa = 9.79FNHH243 pKa = 6.72WFHH246 pKa = 6.76FHH248 pKa = 6.54LQPGISPDD256 pKa = 3.64QEE258 pKa = 3.82NDD260 pKa = 3.45PPVASPITGQTINEE274 pKa = 4.32GEE276 pKa = 4.33SFAVIDD282 pKa = 4.05LNSYY286 pKa = 10.37VFDD289 pKa = 5.45DD290 pKa = 4.5LTPDD294 pKa = 3.45TLLIWTTEE302 pKa = 4.2TIDD305 pKa = 5.48LIVTIQDD312 pKa = 3.35SNQAQVSTPNPNWNGTEE329 pKa = 4.08TITFIVTDD337 pKa = 4.04EE338 pKa = 4.51GGKK341 pKa = 10.03SDD343 pKa = 3.69TTTGTFTMLGDD354 pKa = 3.61NQIPVAVNDD363 pKa = 3.6SSNTIEE369 pKa = 4.19EE370 pKa = 4.04QSVSINLTANDD381 pKa = 3.81SDD383 pKa = 4.31ADD385 pKa = 3.92NDD387 pKa = 4.01SLHH390 pKa = 7.2IDD392 pKa = 4.85RR393 pKa = 11.84ILTTNNGTVVIDD405 pKa = 3.62NDD407 pKa = 3.85SMVTYY412 pKa = 9.28TPNVDD417 pKa = 4.01FHH419 pKa = 6.39GTDD422 pKa = 2.86SFEE425 pKa = 4.39YY426 pKa = 10.85VVTDD430 pKa = 3.68GNGGRR435 pKa = 11.84DD436 pKa = 3.23TATVFVTVDD445 pKa = 3.25NRR447 pKa = 11.84NDD449 pKa = 3.32PPEE452 pKa = 4.39IVNLPDD458 pKa = 4.06VINMTTNDD466 pKa = 3.38STKK469 pKa = 10.71LYY471 pKa = 9.72MMDD474 pKa = 3.13YY475 pKa = 10.21AYY477 pKa = 10.61DD478 pKa = 3.54VDD480 pKa = 4.52TPDD483 pKa = 5.8SLLTWSFSVNDD494 pKa = 3.87PAISYY499 pKa = 10.45AYY501 pKa = 10.25DD502 pKa = 3.24QTTDD506 pKa = 2.78TLTIYY511 pKa = 10.41SHH513 pKa = 7.2EE514 pKa = 4.48INGDD518 pKa = 3.65FYY520 pKa = 11.69LFTTLTDD527 pKa = 3.75DD528 pKa = 5.31SGASDD533 pKa = 3.77QDD535 pKa = 3.95TITIRR540 pKa = 11.84VSGTSALDD548 pKa = 3.6LRR550 pKa = 11.84STAIPDD556 pKa = 3.42QFTVLQNFPNPFNPSTHH573 pKa = 6.47LAFGLTKK580 pKa = 10.65SSDD583 pKa = 3.48VQIEE587 pKa = 3.94IFNILGQRR595 pKa = 11.84VFSKK599 pKa = 10.59RR600 pKa = 11.84LSGLSAGFHH609 pKa = 4.98TVKK612 pKa = 10.24VDD614 pKa = 3.41AARR617 pKa = 11.84WPAGIYY623 pKa = 10.06LYY625 pKa = 10.41RR626 pKa = 11.84ISAEE630 pKa = 3.55NTMVIKK636 pKa = 10.85KK637 pKa = 8.83MVLVRR642 pKa = 4.15

Molecular weight: 72.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H1XPH5|H1XPH5_9BACT Uncharacterized protein OS=Caldithrix abyssi DSM 13497 OX=880073 GN=Cabys_2709 PE=4 SV=1
MM1 pKa = 7.32PCGRR5 pKa = 11.84KK6 pKa = 9.29RR7 pKa = 11.84KK8 pKa = 7.42RR9 pKa = 11.84AKK11 pKa = 9.56MATHH15 pKa = 6.33KK16 pKa = 10.31RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.16NRR25 pKa = 11.84HH26 pKa = 4.6KK27 pKa = 10.96KK28 pKa = 10.03KK29 pKa = 10.26IRR31 pKa = 3.43

Molecular weight: 3.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3674

0

3674

1397650

31

4710

380.4

43.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.103 ± 0.04

0.686 ± 0.013

5.294 ± 0.034

6.622 ± 0.044

5.251 ± 0.031

6.486 ± 0.038

2.016 ± 0.02

7.353 ± 0.035

6.686 ± 0.043

10.331 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.213 ± 0.016

4.655 ± 0.032

4.136 ± 0.025

4.229 ± 0.029

5.096 ± 0.033

5.522 ± 0.031

4.81 ± 0.032

6.439 ± 0.031

1.249 ± 0.017

3.823 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski