Vibrio galatheae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3604 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F4NJC6|A0A0F4NJC6_9VIBR Terminase_6C domain-containing protein OS=Vibrio galatheae OX=579748 GN=TW81_09850 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 8.8KK3 pKa = 8.26TLVALSVLMAATSAQAIEE21 pKa = 5.48LYY23 pKa = 10.36NQDD26 pKa = 3.15GVTVNLSGDD35 pKa = 3.42VEE37 pKa = 3.96IRR39 pKa = 11.84YY40 pKa = 9.83LKK42 pKa = 10.62DD43 pKa = 2.85IGVDD47 pKa = 3.3QITKK51 pKa = 10.1QEE53 pKa = 3.85IDD55 pKa = 3.58DD56 pKa = 4.31ADD58 pKa = 3.86FGFDD62 pKa = 2.66TRR64 pKa = 11.84YY65 pKa = 10.5AVNDD69 pKa = 3.81DD70 pKa = 4.22FQVGAYY76 pKa = 10.1FEE78 pKa = 4.78FSGDD82 pKa = 3.56DD83 pKa = 3.31GDD85 pKa = 3.86RR86 pKa = 11.84AVGNTSVGNVYY97 pKa = 10.55FGFYY101 pKa = 10.05HH102 pKa = 6.36NAYY105 pKa = 7.61GTLKK109 pKa = 10.52VGKK112 pKa = 9.77LDD114 pKa = 4.86TILDD118 pKa = 3.95DD119 pKa = 4.58AGIGADD125 pKa = 3.76YY126 pKa = 10.88IFGVNSFFTDD136 pKa = 2.83AGFGGDD142 pKa = 3.03EE143 pKa = 4.16AVRR146 pKa = 11.84YY147 pKa = 10.01DD148 pKa = 3.76YY149 pKa = 11.74DD150 pKa = 3.46NGSFYY155 pKa = 11.28AGLGLIQDD163 pKa = 3.78KK164 pKa = 10.94HH165 pKa = 7.81DD166 pKa = 4.74DD167 pKa = 3.64GAIGVDD173 pKa = 3.21GHH175 pKa = 6.27YY176 pKa = 10.97VDD178 pKa = 5.49AKK180 pKa = 9.66VGYY183 pKa = 9.24RR184 pKa = 11.84VAGFDD189 pKa = 3.46FTVLYY194 pKa = 10.84GDD196 pKa = 4.21TEE198 pKa = 4.5LKK200 pKa = 10.97GVDD203 pKa = 3.59SDD205 pKa = 4.92SNALNKK211 pKa = 10.22EE212 pKa = 3.99DD213 pKa = 3.77TLIAGEE219 pKa = 3.97VRR221 pKa = 11.84YY222 pKa = 10.22AGIEE226 pKa = 3.98NLNLEE231 pKa = 4.42LGYY234 pKa = 11.23YY235 pKa = 10.13NVDD238 pKa = 3.35SKK240 pKa = 11.52PFGGSSTDD248 pKa = 3.36VNTLAVAADD257 pKa = 3.83YY258 pKa = 8.47TWNKK262 pKa = 6.81VTFAGGFSTTDD273 pKa = 3.2YY274 pKa = 9.92STAAAGTDD282 pKa = 3.73FDD284 pKa = 4.27QWFLNAGYY292 pKa = 10.42GIAPNTTVYY301 pKa = 10.99VEE303 pKa = 4.47IGDD306 pKa = 3.81NDD308 pKa = 3.82KK309 pKa = 11.74ANTDD313 pKa = 3.17LGYY316 pKa = 11.05GVGIKK321 pKa = 10.55ASFF324 pKa = 3.21

Molecular weight: 34.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F4NHY2|A0A0F4NHY2_9VIBR Uncharacterized protein OS=Vibrio galatheae OX=579748 GN=TW81_17355 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84ATINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSKK44 pKa = 10.84

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3604

0

3604

1164118

31

3040

323.0

35.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.733 ± 0.046

1.017 ± 0.013

5.495 ± 0.036

6.463 ± 0.038

4.061 ± 0.027

6.773 ± 0.034

2.242 ± 0.022

6.322 ± 0.033

5.202 ± 0.035

10.436 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.675 ± 0.022

4.102 ± 0.025

3.842 ± 0.021

4.825 ± 0.036

4.546 ± 0.033

6.621 ± 0.04

5.25 ± 0.024

7.195 ± 0.028

1.226 ± 0.017

2.976 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski