Trichinella sp. T6

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella; unclassified Trichinella

Average proteome isoelectric point is 7.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18636 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0XA74|A0A0V0XA74_9BILA Uncharacterized protein OS=Trichinella sp. T6 OX=92179 GN=T06_11651 PE=4 SV=1
MM1 pKa = 7.78EE2 pKa = 5.25DD3 pKa = 2.75WKK5 pKa = 11.1IFDD8 pKa = 4.19FDD10 pKa = 3.79VDD12 pKa = 3.85LMLWLVMLAMLLHH25 pKa = 5.43MAKK28 pKa = 10.42YY29 pKa = 10.45LLDD32 pKa = 3.73YY33 pKa = 11.44LEE35 pKa = 4.54TFQEE39 pKa = 4.26KK40 pKa = 10.83EE41 pKa = 3.96EE42 pKa = 4.85LIQLLNEE49 pKa = 3.77THH51 pKa = 6.37YY52 pKa = 11.81SMEE55 pKa = 3.9QVEE58 pKa = 4.68QIVEE62 pKa = 4.22HH63 pKa = 5.41QQSVDD68 pKa = 3.12NKK70 pKa = 10.54DD71 pKa = 4.01YY72 pKa = 11.01IGEE75 pKa = 4.15PYY77 pKa = 10.21IFYY80 pKa = 10.94DD81 pKa = 3.27PDD83 pKa = 4.24KK84 pKa = 11.38DD85 pKa = 4.21VFTLQIDD92 pKa = 4.34FNNLSEE98 pKa = 4.58DD99 pKa = 3.47NCIKK103 pKa = 10.69VCLAVWNALVNINSDD118 pKa = 3.45SDD120 pKa = 4.14SDD122 pKa = 4.73DD123 pKa = 4.41DD124 pKa = 5.71DD125 pKa = 5.98SEE127 pKa = 4.73EE128 pKa = 5.05SDD130 pKa = 3.58EE131 pKa = 4.16QQ132 pKa = 3.8

Molecular weight: 15.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0WVB8|A0A0V0WVB8_9BILA Uncharacterized protein OS=Trichinella sp. T6 OX=92179 GN=T06_15559 PE=4 SV=1
MM1 pKa = 7.32ARR3 pKa = 11.84SARR6 pKa = 11.84SSSRR10 pKa = 11.84SRR12 pKa = 11.84SRR14 pKa = 11.84SSSRR18 pKa = 11.84RR19 pKa = 11.84SMSSRR24 pKa = 11.84RR25 pKa = 11.84GSLTRR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84PISRR38 pKa = 11.84IQTPKK43 pKa = 10.33RR44 pKa = 11.84STRR47 pKa = 11.84QILVPSSRR55 pKa = 11.84LKK57 pKa = 9.77LQKK60 pKa = 10.27RR61 pKa = 11.84PSAVQLDD68 pKa = 4.04GGEE71 pKa = 4.16APSEE75 pKa = 4.29IICPTCLQSLRR86 pKa = 11.84SRR88 pKa = 11.84SRR90 pKa = 11.84SKK92 pKa = 10.85SITRR96 pKa = 11.84KK97 pKa = 9.61KK98 pKa = 10.85SPGKK102 pKa = 9.58KK103 pKa = 8.93VSRR106 pKa = 11.84KK107 pKa = 7.81VASRR111 pKa = 11.84PRR113 pKa = 11.84SKK115 pKa = 10.92SRR117 pKa = 11.84GKK119 pKa = 9.94SRR121 pKa = 11.84RR122 pKa = 11.84NKK124 pKa = 9.1KK125 pKa = 10.28RR126 pKa = 11.84SVKK129 pKa = 10.23KK130 pKa = 10.29SNQKK134 pKa = 10.42AVLIKK139 pKa = 9.59ATKK142 pKa = 9.47SRR144 pKa = 11.84RR145 pKa = 11.84KK146 pKa = 9.6RR147 pKa = 11.84SSLKK151 pKa = 10.25SIQNRR156 pKa = 11.84SVVV159 pKa = 3.14

Molecular weight: 18.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14632

4004

18636

8581469

30

14872

460.5

52.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.408 ± 0.015

2.648 ± 0.017

5.223 ± 0.014

6.294 ± 0.02

4.588 ± 0.013

4.975 ± 0.018

2.463 ± 0.007

5.612 ± 0.014

6.081 ± 0.02

9.634 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.411 ± 0.009

5.017 ± 0.013

4.367 ± 0.015

4.264 ± 0.015

5.626 ± 0.018

8.356 ± 0.021

5.305 ± 0.013

6.419 ± 0.014

1.212 ± 0.007

3.095 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski