Pigeon adenovirus 2

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Pigeon aviadenovirus B

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 35 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D8QM97|A0A1D8QM97_9ADEN Protein ORF13 OS=Pigeon adenovirus 2 OX=1907767 GN=ORF13 PE=4 SV=1
MM1 pKa = 7.65LKK3 pKa = 10.1RR4 pKa = 11.84RR5 pKa = 11.84NEE7 pKa = 3.83LSDD10 pKa = 3.14DD11 pKa = 4.19RR12 pKa = 11.84KK13 pKa = 10.18RR14 pKa = 11.84KK15 pKa = 9.36RR16 pKa = 11.84PRR18 pKa = 11.84AVGSSDD24 pKa = 4.68SINLNYY30 pKa = 9.41PFWYY34 pKa = 9.82SAEE37 pKa = 4.14EE38 pKa = 3.89NTEE41 pKa = 3.79IVPPFIDD48 pKa = 4.02PSGPLYY54 pKa = 11.08DD55 pKa = 4.43QDD57 pKa = 3.35GKK59 pKa = 11.68LNIRR63 pKa = 11.84LTSPIALISNGVGLGYY79 pKa = 10.57DD80 pKa = 3.24SSLEE84 pKa = 4.05NVNNRR89 pKa = 11.84LGVRR93 pKa = 11.84IDD95 pKa = 3.22SDD97 pKa = 3.74GALEE101 pKa = 4.04VTPDD105 pKa = 3.61GLNVRR110 pKa = 11.84VDD112 pKa = 3.86DD113 pKa = 4.13EE114 pKa = 4.92TVGINPSWEE123 pKa = 4.11LAVQFADD130 pKa = 3.62EE131 pKa = 4.65QPFSTSTAGIGLNVDD146 pKa = 3.52DD147 pKa = 4.99TLLISSSDD155 pKa = 3.56SDD157 pKa = 3.71PSHH160 pKa = 6.89YY161 pKa = 10.61EE162 pKa = 3.7LGVHH166 pKa = 6.93LNTEE170 pKa = 4.43GPITADD176 pKa = 3.27EE177 pKa = 4.35NGIDD181 pKa = 5.11LDD183 pKa = 4.42FNPHH187 pKa = 5.43TLTVQTNEE195 pKa = 3.79QNQGILSVFLKK206 pKa = 11.14ANGGLGATEE215 pKa = 4.03SGIGVNYY222 pKa = 10.22DD223 pKa = 3.59EE224 pKa = 5.45QSLHH228 pKa = 6.86LDD230 pKa = 3.38SGNDD234 pKa = 3.37LAVRR238 pKa = 11.84FAPEE242 pKa = 3.6QPFTVTPQGITLNIDD257 pKa = 3.28PSSLQVQNGTLSALTSGLGLDD278 pKa = 3.99IDD280 pKa = 4.54NNTLQVDD287 pKa = 4.1TVNNKK292 pKa = 6.99EE293 pKa = 4.27TLSVRR298 pKa = 11.84IAPDD302 pKa = 3.29NPVEE306 pKa = 4.46ADD308 pKa = 3.14SSGIKK313 pKa = 10.23LLYY316 pKa = 8.76NTGDD320 pKa = 3.49FFDD323 pKa = 4.64NGQSGLSAVTPISYY337 pKa = 10.42LSPYY341 pKa = 9.7CYY343 pKa = 10.64YY344 pKa = 10.63EE345 pKa = 5.86AGDD348 pKa = 4.19SSLTDD353 pKa = 3.16YY354 pKa = 11.34SSTVRR359 pKa = 11.84SSGNTNWPIAAYY371 pKa = 10.26VKK373 pKa = 10.21VANCSGVCNGVLNFVLNRR391 pKa = 11.84NNITFLGTTNDD402 pKa = 3.39SNNNYY407 pKa = 10.0VKK409 pKa = 10.57FCFVLNPGGNLDD421 pKa = 4.61GIHH424 pKa = 6.73SYY426 pKa = 8.73VHH428 pKa = 5.79NNIYY432 pKa = 10.29FPAGANTPTFMAPTRR447 pKa = 11.84TPPPNQTIPANWANWFVAKK466 pKa = 9.62WVGVRR471 pKa = 11.84VRR473 pKa = 11.84FYY475 pKa = 10.93ATDD478 pKa = 3.19SSGNQAIEE486 pKa = 4.66SYY488 pKa = 8.98VHH490 pKa = 6.43YY491 pKa = 10.79YY492 pKa = 8.77PALVNGSSGYY502 pKa = 9.52PVIFFVFEE510 pKa = 3.55IRR512 pKa = 11.84LPSGQNWYY520 pKa = 8.53TGSGLSTDD528 pKa = 3.95YY529 pKa = 11.1EE530 pKa = 4.32ILNSGPIPFQYY541 pKa = 10.88LATKK545 pKa = 10.08PSYY548 pKa = 9.65TAVSQQ553 pKa = 3.51

Molecular weight: 59.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D8QMA3|A0A1D8QMA3_9ADEN Protein ORF0 OS=Pigeon adenovirus 2 OX=1907767 GN=ORF0 PE=4 SV=1
MM1 pKa = 7.74SILISPSDD9 pKa = 3.46NRR11 pKa = 11.84GWGMRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84TRR20 pKa = 11.84SSMRR24 pKa = 11.84GVGVRR29 pKa = 11.84RR30 pKa = 11.84PLTLRR35 pKa = 11.84RR36 pKa = 11.84LLGLGTTTSRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84NRR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84AVRR56 pKa = 11.84GGASRR61 pKa = 11.84RR62 pKa = 11.84TSTSTRR68 pKa = 11.84IIAVRR73 pKa = 11.84TRR75 pKa = 11.84TSRR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 3.32

Molecular weight: 9.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

35

0

35

12993

40

1368

371.2

42.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.757 ± 0.309

1.793 ± 0.217

5.257 ± 0.22

5.749 ± 0.559

4.526 ± 0.265

5.711 ± 0.331

2.601 ± 0.242

4.418 ± 0.171

3.91 ± 0.331

9.405 ± 0.406

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.517 ± 0.188

4.726 ± 0.468

6.026 ± 0.223

3.702 ± 0.228

7.25 ± 0.474

7.543 ± 0.261

6.011 ± 0.275

6.434 ± 0.233

1.408 ± 0.157

4.256 ± 0.31
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski