Kibdelosporangium aridum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae;

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W1ZGX4|A0A1W1ZGX4_KIBAR Putative baseplate assembly protein OS=Kibdelosporangium aridum OX=2030 GN=SAMN05661093_00061 PE=4 SV=1
MM1 pKa = 7.12STTFATFVYY10 pKa = 10.27LLSTLSVDD18 pKa = 4.24PSPKK22 pKa = 10.24QKK24 pKa = 10.98DD25 pKa = 3.34KK26 pKa = 11.38VSAHH30 pKa = 5.36FRR32 pKa = 11.84IQVSHH37 pKa = 5.41MRR39 pKa = 11.84TWFRR43 pKa = 11.84TAGLVAVVCTPLMFVAGPGYY63 pKa = 10.7AATEE67 pKa = 3.97VDD69 pKa = 3.45KK70 pKa = 11.41SYY72 pKa = 8.28TTAVLKK78 pKa = 9.78NTDD81 pKa = 2.76NRR83 pKa = 11.84LNVLAGAGSAHH94 pKa = 7.93DD95 pKa = 3.69IRR97 pKa = 11.84IDD99 pKa = 3.95LVDD102 pKa = 3.54NNYY105 pKa = 10.03IVTDD109 pKa = 3.87TGNLLITAAPCEE121 pKa = 4.1RR122 pKa = 11.84LTNPEE127 pKa = 4.13RR128 pKa = 11.84VSCPLPVSGITVEE141 pKa = 4.37AGEE144 pKa = 5.0LNDD147 pKa = 3.91TVQLSDD153 pKa = 3.48SVTVPSTLIGGAGNDD168 pKa = 3.97RR169 pKa = 11.84LDD171 pKa = 3.85GGAGNDD177 pKa = 3.84SLFGGAGNDD186 pKa = 3.78GLLGGAGDD194 pKa = 4.54DD195 pKa = 3.98YY196 pKa = 11.87LVGEE200 pKa = 4.99AGNDD204 pKa = 3.45ALLGGTDD211 pKa = 3.7NDD213 pKa = 4.12YY214 pKa = 11.49LDD216 pKa = 4.37SGVGNDD222 pKa = 3.77YY223 pKa = 11.29LFGGDD228 pKa = 4.71GYY230 pKa = 11.41DD231 pKa = 3.63GLLGGAGDD239 pKa = 4.54DD240 pKa = 3.98YY241 pKa = 11.83LVGEE245 pKa = 4.58AGGDD249 pKa = 3.67GLLGGDD255 pKa = 3.97GNDD258 pKa = 3.77YY259 pKa = 11.1LDD261 pKa = 4.91GGAEE265 pKa = 3.99TDD267 pKa = 4.05YY268 pKa = 11.69LDD270 pKa = 4.73GGAGNDD276 pKa = 3.33RR277 pKa = 11.84LFGSTGDD284 pKa = 4.16DD285 pKa = 3.37YY286 pKa = 11.83LFSRR290 pKa = 11.84DD291 pKa = 3.31GGAGNDD297 pKa = 4.11SVDD300 pKa = 3.9GGPGTDD306 pKa = 3.6TCDD309 pKa = 3.75ADD311 pKa = 4.81PGDD314 pKa = 4.08TVINCPP320 pKa = 3.9

Molecular weight: 32.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W2DH51|A0A1W2DH51_KIBAR Uncharacterized protein OS=Kibdelosporangium aridum OX=2030 GN=SAMN05661093_03305 PE=4 SV=1
MM1 pKa = 7.53SKK3 pKa = 10.53GKK5 pKa = 8.66RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 8.7THH19 pKa = 5.15GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AILSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.66GRR42 pKa = 11.84SEE44 pKa = 3.94LSAA47 pKa = 4.73

Molecular weight: 5.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11140

0

11140

3722341

39

6946

334.1

36.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.358 ± 0.032

0.797 ± 0.007

6.009 ± 0.02

5.307 ± 0.024

3.017 ± 0.014

8.677 ± 0.022

2.207 ± 0.012

4.03 ± 0.018

2.489 ± 0.019

10.179 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.952 ± 0.01

2.366 ± 0.016

5.736 ± 0.023

3.233 ± 0.013

7.393 ± 0.023

5.46 ± 0.016

6.239 ± 0.022

8.782 ± 0.022

1.605 ± 0.009

2.162 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski