Ferrimonas sp. IMCC35002

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Ferrimonadaceae; Ferrimonas; unclassified Ferrimonas

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4149 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V5NYR8|A0A4V5NYR8_9GAMM HD domain-containing protein OS=Ferrimonas sp. IMCC35002 OX=2569539 GN=FCL42_08205 PE=4 SV=1
MM1 pKa = 7.73HH2 pKa = 7.23YY3 pKa = 8.38NTSEE7 pKa = 4.01LCDD10 pKa = 4.33LYY12 pKa = 11.31AEE14 pKa = 4.2QVDD17 pKa = 4.32VVEE20 pKa = 5.02PMFTNFGGCDD30 pKa = 3.14SFGGEE35 pKa = 4.45LQTIKK40 pKa = 10.73CFEE43 pKa = 4.75DD44 pKa = 3.25SVLIAEE50 pKa = 4.55TLEE53 pKa = 3.79QDD55 pKa = 3.49GTGKK59 pKa = 10.29VLLVDD64 pKa = 4.04GGGSLRR70 pKa = 11.84RR71 pKa = 11.84ALIDD75 pKa = 3.37AKK77 pKa = 10.14MAEE80 pKa = 4.61LAAQNNWEE88 pKa = 3.95GLIVYY93 pKa = 9.28GSVRR97 pKa = 11.84EE98 pKa = 3.88VDD100 pKa = 3.47ALVDD104 pKa = 3.44IDD106 pKa = 5.15IGIQALASIPVGAYY120 pKa = 6.73QTGEE124 pKa = 4.11GAVDD128 pKa = 3.49VPVNFGGVTFLPEE141 pKa = 3.5DD142 pKa = 4.26HH143 pKa = 7.27IYY145 pKa = 11.27ADD147 pKa = 3.48STGIILSPDD156 pKa = 3.9PLDD159 pKa = 4.64LDD161 pKa = 3.92

Molecular weight: 17.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4U1BK45|A0A4U1BK45_9GAMM Arginine N-succinyltransferase OS=Ferrimonas sp. IMCC35002 OX=2569539 GN=astA PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.32AGRR28 pKa = 11.84QILARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.4GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4149

0

4149

1391800

24

5040

335.5

37.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.409 ± 0.045

1.062 ± 0.014

5.601 ± 0.037

6.031 ± 0.032

3.763 ± 0.024

7.35 ± 0.04

2.33 ± 0.022

5.356 ± 0.033

4.453 ± 0.035

11.029 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.655 ± 0.021

3.758 ± 0.027

4.239 ± 0.023

5.385 ± 0.041

4.936 ± 0.03

6.429 ± 0.031

5.138 ± 0.028

6.846 ± 0.037

1.387 ± 0.016

2.844 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski