Paenibacillus antri

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6188 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5R9G3Y3|A0A5R9G3Y3_9BACL Uncharacterized protein OS=Paenibacillus antri OX=2582848 GN=FE782_23975 PE=4 SV=1
MM1 pKa = 7.79SIQISEE7 pKa = 4.01IVMDD11 pKa = 4.58GLSAVQTSDD20 pKa = 5.53DD21 pKa = 4.77EE22 pKa = 5.2IDD24 pKa = 4.58LYY26 pKa = 11.16DD27 pKa = 4.03IPTVIRR33 pKa = 11.84WLEE36 pKa = 3.65AHH38 pKa = 6.77SFPEE42 pKa = 3.92AASWMGCHH50 pKa = 4.87EE51 pKa = 3.96TAYY54 pKa = 10.69RR55 pKa = 11.84DD56 pKa = 3.58GLIVGFEE63 pKa = 4.01VEE65 pKa = 4.1PWW67 pKa = 3.07

Molecular weight: 7.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5R9GJ65|A0A5R9GJ65_9BACL N-acetylmuramoyl-L-alanine amidase OS=Paenibacillus antri OX=2582848 GN=FE782_04435 PE=4 SV=1
MM1 pKa = 7.6RR2 pKa = 11.84PSRR5 pKa = 11.84NDD7 pKa = 2.94RR8 pKa = 11.84PRR10 pKa = 11.84NPSRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84PSRR19 pKa = 11.84RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84SRR24 pKa = 11.84PSRR27 pKa = 11.84KK28 pKa = 8.29PPRR31 pKa = 11.84SRR33 pKa = 11.84RR34 pKa = 11.84VPLPRR39 pKa = 11.84KK40 pKa = 7.72TRR42 pKa = 11.84TTSRR46 pKa = 11.84SLPRR50 pKa = 11.84KK51 pKa = 8.23RR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84SRR56 pKa = 11.84RR57 pKa = 11.84TSRR60 pKa = 11.84TICTT64 pKa = 3.66

Molecular weight: 7.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6188

0

6188

2117431

26

3471

342.2

37.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.201 ± 0.045

0.716 ± 0.009

5.405 ± 0.024

6.932 ± 0.028

4.206 ± 0.023

8.0 ± 0.031

1.943 ± 0.016

5.457 ± 0.029

4.294 ± 0.028

9.814 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.591 ± 0.016

3.177 ± 0.022

4.533 ± 0.022

2.944 ± 0.019

6.417 ± 0.037

5.711 ± 0.025

5.291 ± 0.025

7.5 ± 0.024

1.424 ± 0.013

3.444 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski