Cucurbit yellow stunting disorder virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8JUU9|Q8JUU9_9CLOS 1b (Fragment) OS=Cucurbit yellow stunting disorder virus OX=51330 PE=4 SV=2
MM1 pKa = 7.34LADD4 pKa = 3.91EE5 pKa = 5.33FGLAIIIALLIITLGVVCAYY25 pKa = 9.83IGSCVYY31 pKa = 10.92NHH33 pKa = 6.45FFSDD37 pKa = 3.08RR38 pKa = 11.84DD39 pKa = 3.51INIEE43 pKa = 3.9EE44 pKa = 4.85GEE46 pKa = 4.35VSS48 pKa = 3.22

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q808I9|Q808I9_9CLOS p22 OS=Cucurbit yellow stunting disorder virus OX=51330 PE=4 SV=1
MM1 pKa = 7.33YY2 pKa = 10.48KK3 pKa = 10.25NFSTIIFQFVCSRR16 pKa = 11.84VKK18 pKa = 9.99LWRR21 pKa = 11.84RR22 pKa = 11.84LVWILVLLSLLSAVMLMVLL41 pKa = 4.49

Molecular weight: 4.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13

0

13

5126

41

1977

394.3

45.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.824 ± 0.382

2.107 ± 0.248

6.535 ± 0.381

5.638 ± 0.333

5.638 ± 0.653

4.78 ± 0.396

1.99 ± 0.259

6.867 ± 0.317

8.369 ± 0.477

9.657 ± 0.638

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.653 ± 0.293

6.535 ± 0.446

3.102 ± 0.241

2.614 ± 0.256

4.76 ± 0.367

7.452 ± 0.393

5.17 ± 0.404

6.964 ± 0.314

0.702 ± 0.169

4.643 ± 0.43
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski