Nocardia panacis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Nocardiaceae; Nocardia

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6591 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3A4KBV5|A0A3A4KBV5_9NOCA Alpha/beta hydrolase OS=Nocardia panacis OX=2340916 GN=D5S18_27705 PE=3 SV=1
MM1 pKa = 7.2NRR3 pKa = 11.84IPCYY7 pKa = 10.57SEE9 pKa = 4.33FGQVSEE15 pKa = 4.55IDD17 pKa = 3.47NLAEE21 pKa = 4.13RR22 pKa = 11.84LQGDD26 pKa = 3.65AYY28 pKa = 11.05DD29 pKa = 4.04PVNVPVEE36 pKa = 4.32CTLTVYY42 pKa = 10.61VADD45 pKa = 5.07DD46 pKa = 4.13EE47 pKa = 5.25LDD49 pKa = 3.5EE50 pKa = 4.48LLPVIMEE57 pKa = 4.74DD58 pKa = 4.7LGIDD62 pKa = 3.39KK63 pKa = 10.64DD64 pKa = 4.37GYY66 pKa = 9.66SAAAGRR72 pKa = 11.84TVTLGLRR79 pKa = 11.84DD80 pKa = 3.22ISSRR84 pKa = 11.84SEE86 pKa = 3.77PNGVYY91 pKa = 9.84QGLIDD96 pKa = 3.69QYY98 pKa = 10.55EE99 pKa = 4.44SQSGADD105 pKa = 3.25

Molecular weight: 11.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3A4K6F3|A0A3A4K6F3_9NOCA MerR family transcriptional regulator OS=Nocardia panacis OX=2340916 GN=D5S18_32875 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.72HH17 pKa = 5.63RR18 pKa = 11.84KK19 pKa = 7.56LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6591

0

6591

2131699

24

17293

323.4

34.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.671 ± 0.045

0.785 ± 0.011

5.949 ± 0.026

5.49 ± 0.038

2.965 ± 0.017

8.862 ± 0.031

2.24 ± 0.015

4.252 ± 0.022

1.928 ± 0.023

10.285 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.862 ± 0.013

2.028 ± 0.016

5.866 ± 0.028

2.846 ± 0.017

8.086 ± 0.031

5.076 ± 0.019

5.981 ± 0.023

8.264 ± 0.035

1.468 ± 0.015

2.097 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski