Paracandidimonas soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Paracandidimonas

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3626 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R3UQX3|A0A4R3UQX3_9BURK Nitric oxide reductase NorD protein OS=Paracandidimonas soli OX=1917182 GN=EV686_11284 PE=4 SV=1
MM1 pKa = 7.65EE2 pKa = 5.85LPDD5 pKa = 4.38EE6 pKa = 4.67IYY8 pKa = 10.79EE9 pKa = 4.12QVEE12 pKa = 4.02QLSEE16 pKa = 3.97QGNDD20 pKa = 3.1LCEE23 pKa = 4.39EE24 pKa = 4.47GDD26 pKa = 3.73FTGAIAVWQSALALLPPPRR45 pKa = 11.84QQWEE49 pKa = 3.97ASVWLHH55 pKa = 6.19ASIGDD60 pKa = 3.57AYY62 pKa = 10.09YY63 pKa = 10.61QEE65 pKa = 6.06DD66 pKa = 3.56EE67 pKa = 4.28WQDD70 pKa = 2.93AKK72 pKa = 11.39AAFFDD77 pKa = 5.08ALNCPDD83 pKa = 3.6AQVNPFVHH91 pKa = 6.12YY92 pKa = 10.07MLGKK96 pKa = 8.39TLLRR100 pKa = 11.84LDD102 pKa = 4.42DD103 pKa = 4.01EE104 pKa = 4.95EE105 pKa = 5.33GAVDD109 pKa = 3.78HH110 pKa = 6.9LLRR113 pKa = 11.84AYY115 pKa = 9.86MLDD118 pKa = 3.4GVDD121 pKa = 4.77IFDD124 pKa = 4.37ADD126 pKa = 3.89EE127 pKa = 4.57EE128 pKa = 4.36EE129 pKa = 5.42GPDD132 pKa = 5.25ALALLQNKK140 pKa = 9.39GLVDD144 pKa = 3.74EE145 pKa = 4.93LL146 pKa = 4.18

Molecular weight: 16.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V2VSK3|A0A4V2VSK3_9BURK 3-dehydroquinate synthase OS=Paracandidimonas soli OX=1917182 GN=aroB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 8.99TRR25 pKa = 11.84AGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3626

0

3626

1167027

25

2121

321.8

35.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.796 ± 0.053

0.938 ± 0.014

5.379 ± 0.033

5.45 ± 0.04

3.437 ± 0.027

8.263 ± 0.041

2.276 ± 0.019

5.07 ± 0.028

3.118 ± 0.034

10.82 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.645 ± 0.02

2.721 ± 0.023

5.129 ± 0.027

4.14 ± 0.03

6.953 ± 0.039

5.932 ± 0.026

4.939 ± 0.023

7.192 ± 0.035

1.413 ± 0.017

2.386 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski