Arthrobacter phage YesChef

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yangvirus; unclassified Yangvirus

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G8R2V6|A0A6G8R2V6_9CAUD Uncharacterized protein OS=Arthrobacter phage YesChef OX=2713261 GN=31 PE=4 SV=1
MM1 pKa = 7.84LEE3 pKa = 4.3YY4 pKa = 10.84LDD6 pKa = 5.91DD7 pKa = 5.77DD8 pKa = 5.26PDD10 pKa = 5.47LEE12 pKa = 5.09LDD14 pKa = 3.26PRR16 pKa = 11.84EE17 pKa = 4.38YY18 pKa = 11.11VCEE21 pKa = 4.2TCRR24 pKa = 11.84LTHH27 pKa = 6.06WRR29 pKa = 11.84GAPDD33 pKa = 3.65PCDD36 pKa = 3.41RR37 pKa = 11.84SS38 pKa = 3.51

Molecular weight: 4.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G8R305|A0A6G8R305_9CAUD Uncharacterized protein OS=Arthrobacter phage YesChef OX=2713261 GN=65 PE=4 SV=1
MM1 pKa = 7.51PRR3 pKa = 11.84KK4 pKa = 8.7KK5 pKa = 9.21TKK7 pKa = 10.15TNLPADD13 pKa = 3.55WHH15 pKa = 6.02EE16 pKa = 4.52HH17 pKa = 6.55DD18 pKa = 4.07SAEE21 pKa = 4.27ANGRR25 pKa = 11.84HH26 pKa = 4.91ITAGTEE32 pKa = 3.6VSIRR36 pKa = 11.84GEE38 pKa = 3.62RR39 pKa = 11.84GRR41 pKa = 11.84FRR43 pKa = 11.84FLKK46 pKa = 10.33RR47 pKa = 11.84VTRR50 pKa = 11.84DD51 pKa = 3.74DD52 pKa = 3.36GRR54 pKa = 11.84EE55 pKa = 3.79WLDD58 pKa = 3.17FWGGPKK64 pKa = 10.27GSEE67 pKa = 3.47AWRR70 pKa = 11.84SFSADD75 pKa = 3.0QIRR78 pKa = 11.84RR79 pKa = 11.84VHH81 pKa = 7.36RR82 pKa = 11.84INTTEE87 pKa = 3.86RR88 pKa = 11.84ALAAQHH94 pKa = 6.09KK95 pKa = 9.21AKK97 pKa = 10.74KK98 pKa = 9.0EE99 pKa = 3.87ALRR102 pKa = 11.84NAA104 pKa = 3.94

Molecular weight: 12.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

13389

36

990

194.0

21.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.578 ± 0.561

0.478 ± 0.093

6.475 ± 0.378

6.55 ± 0.409

3.077 ± 0.193

8.201 ± 0.487

1.875 ± 0.142

4.347 ± 0.323

4.25 ± 0.322

8.522 ± 0.337

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.875 ± 0.136

2.293 ± 0.241

5.139 ± 0.321

2.539 ± 0.231

7.342 ± 0.622

5.407 ± 0.278

6.573 ± 0.354

7.11 ± 0.262

1.748 ± 0.121

2.622 ± 0.195
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski