Sediminibacillus albus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Sediminibacillus

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3476 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G9CMM5|A0A1G9CMM5_9BACI Ribosomal silencing factor RsfS OS=Sediminibacillus albus OX=407036 GN=rsfS PE=3 SV=1
MM1 pKa = 7.85EE2 pKa = 4.6SQSLQGAQEE11 pKa = 3.99LLCINTEE18 pKa = 3.94KK19 pKa = 11.02VYY21 pKa = 11.1DD22 pKa = 3.88WVILQANVSQNVLAAALGALPIDD45 pKa = 3.78PCGPTVSNLTTTCFLVDD62 pKa = 3.73PDD64 pKa = 4.31TGEE67 pKa = 4.06EE68 pKa = 4.23LPPNAEE74 pKa = 3.63ITIDD78 pKa = 3.6EE79 pKa = 4.58LGEE82 pKa = 4.17RR83 pKa = 11.84EE84 pKa = 4.47DD85 pKa = 3.48RR86 pKa = 11.84TFVIDD91 pKa = 4.3GSLVTLQRR99 pKa = 11.84VTFTKK104 pKa = 9.58TLSVVIEE111 pKa = 4.18FSGLTGTTPFVEE123 pKa = 4.44TTEE126 pKa = 4.99PITIEE131 pKa = 3.77IPEE134 pKa = 4.42SLFLCAPEE142 pKa = 4.22GTRR145 pKa = 11.84IAVRR149 pKa = 11.84LSDD152 pKa = 4.57LDD154 pKa = 3.77CSVNVNCVAAALTSVDD170 pKa = 3.3IVLNICQSVQSLADD184 pKa = 3.39VTIEE188 pKa = 4.4LVADD192 pKa = 4.68FCQPRR197 pKa = 11.84DD198 pKa = 3.76VLVEE202 pKa = 3.79QCPTPTIPPQCPVLFPGNCDD222 pKa = 3.9DD223 pKa = 4.73NEE225 pKa = 4.53HH226 pKa = 6.62GATTTHH232 pKa = 6.5PTLTRR237 pKa = 11.84QDD239 pKa = 3.73TNNGG243 pKa = 3.31

Molecular weight: 26.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G9ABA7|A0A1G9ABA7_9BACI Protease I OS=Sediminibacillus albus OX=407036 GN=SAMN05216243_2481 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.23RR12 pKa = 11.84KK13 pKa = 8.12KK14 pKa = 8.46VHH16 pKa = 5.5GFRR19 pKa = 11.84TRR21 pKa = 11.84MSTKK25 pKa = 10.06NGRR28 pKa = 11.84KK29 pKa = 8.49VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.05GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3476

0

3476

992148

29

1996

285.4

32.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.316 ± 0.041

0.635 ± 0.012

5.344 ± 0.033

7.618 ± 0.054

4.489 ± 0.038

6.973 ± 0.044

2.071 ± 0.021

7.585 ± 0.043

6.527 ± 0.044

9.749 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.718 ± 0.02

4.398 ± 0.031

3.646 ± 0.022

4.144 ± 0.028

4.015 ± 0.028

6.095 ± 0.03

5.293 ± 0.029

6.8 ± 0.036

1.06 ± 0.016

3.525 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski