Desulfuromonas acetoxidans (strain DSM 684 / 11070)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas; Desulfuromonas acetoxidans

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3204 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q1K3J6|Q1K3J6_DESA6 Hydroxylamine reductase OS=Desulfuromonas acetoxidans (strain DSM 684 / 11070) OX=281689 GN=hcp PE=3 SV=1
MM1 pKa = 7.98RR2 pKa = 11.84SLKK5 pKa = 9.15MACPTLCVMLLTLCWSGLAAAYY27 pKa = 10.15DD28 pKa = 4.35PIIHH32 pKa = 6.21SEE34 pKa = 4.61FYY36 pKa = 10.47YY37 pKa = 11.12GPDD40 pKa = 3.37SEE42 pKa = 4.72VHH44 pKa = 5.4VVGDD48 pKa = 3.72MLSVPEE54 pKa = 4.75FSLTGEE60 pKa = 4.6GIDD63 pKa = 3.6VVFSGLEE70 pKa = 3.64EE71 pKa = 4.5GGGVEE76 pKa = 4.58KK77 pKa = 11.06YY78 pKa = 10.64AVLLEE83 pKa = 4.11YY84 pKa = 10.79DD85 pKa = 3.97SGSADD90 pKa = 3.5LRR92 pKa = 11.84DD93 pKa = 3.79ATVSLTDD100 pKa = 3.12ATFFFDD106 pKa = 3.51TSGGNEE112 pKa = 4.13DD113 pKa = 3.9FNFAVGMKK121 pKa = 10.41GFDD124 pKa = 3.24EE125 pKa = 4.49SLISLAEE132 pKa = 4.28GSSLSVDD139 pKa = 2.68IASYY143 pKa = 9.72IGYY146 pKa = 9.44GIEE149 pKa = 4.07VLRR152 pKa = 11.84SSATINLDD160 pKa = 3.25GGSTIDD166 pKa = 3.26VSGSVEE172 pKa = 4.24DD173 pKa = 4.49PVTFPDD179 pKa = 3.61SAPSRR184 pKa = 11.84FGYY187 pKa = 10.12GINAGTPGGYY197 pKa = 10.4VNLSLDD203 pKa = 3.47HH204 pKa = 6.75GSAINVEE211 pKa = 4.34TSAYY215 pKa = 10.14AAGDD219 pKa = 3.69TGTSSASSAGARR231 pKa = 11.84LEE233 pKa = 4.21GDD235 pKa = 3.97VVTVALDD242 pKa = 3.42NEE244 pKa = 4.62STIRR248 pKa = 11.84TVATRR253 pKa = 11.84NIASDD258 pKa = 3.62GVTVANARR266 pKa = 11.84NLRR269 pKa = 11.84LGSISNSTIAVAGNSLISAQAFAEE293 pKa = 4.21EE294 pKa = 4.52GAAYY298 pKa = 9.8AYY300 pKa = 10.49VLQTYY305 pKa = 10.42GSGASEE311 pKa = 4.26FLLSDD316 pKa = 3.54STFSATATADD326 pKa = 3.56GYY328 pKa = 11.83ADD330 pKa = 3.59ALGAYY335 pKa = 9.19FSQPEE340 pKa = 3.9VRR342 pKa = 11.84ATLTRR347 pKa = 11.84STIDD351 pKa = 2.72VDD353 pKa = 5.04AISSSYY359 pKa = 10.06GARR362 pKa = 11.84ASGFVGQSNSDD373 pKa = 2.98VRR375 pKa = 11.84LEE377 pKa = 4.08MEE379 pKa = 4.29GATIDD384 pKa = 4.9VLAQTQGDD392 pKa = 3.97FANATGVMIIGATNLDD408 pKa = 3.12IDD410 pKa = 4.25IADD413 pKa = 3.82STVDD417 pKa = 3.38TFAQAAGGEE426 pKa = 4.18AEE428 pKa = 4.47AVGFSLVGSTTISSLVLNRR447 pKa = 11.84SYY449 pKa = 11.07ILSSAVATDD458 pKa = 3.31SDD460 pKa = 4.14ASVGEE465 pKa = 4.37AYY467 pKa = 10.27AAGLIIGVDD476 pKa = 3.74TVAEE480 pKa = 4.4NISLVGSHH488 pKa = 6.4LMSSAHH494 pKa = 5.77AQTGEE499 pKa = 3.9AVSYY503 pKa = 10.6GVFVEE508 pKa = 5.03DD509 pKa = 4.8YY510 pKa = 10.63YY511 pKa = 11.71GGTPEE516 pKa = 3.95VTLNLDD522 pKa = 3.13AHH524 pKa = 6.54SGILADD530 pKa = 3.61WAVYY534 pKa = 8.33TADD537 pKa = 4.55GVVHH541 pKa = 6.73LNNSGTLAGRR551 pKa = 11.84LLVSDD556 pKa = 4.09LTNNVGGRR564 pKa = 11.84FMLLLDD570 pKa = 5.02SDD572 pKa = 4.71DD573 pKa = 4.55LLIGEE578 pKa = 5.12DD579 pKa = 3.56GVGYY583 pKa = 10.73FEE585 pKa = 6.64DD586 pKa = 3.62EE587 pKa = 4.03DD588 pKa = 5.64FYY590 pKa = 11.75FSVADD595 pKa = 4.06RR596 pKa = 11.84AEE598 pKa = 4.25LADD601 pKa = 3.42GTTFLVYY608 pKa = 10.36PSDD611 pKa = 3.48NLGIVSEE618 pKa = 4.52GDD620 pKa = 3.48STSIALLSAGEE631 pKa = 4.15GDD633 pKa = 3.19WTLEE637 pKa = 3.96NLSLEE642 pKa = 4.61TPFDD646 pKa = 3.56TPMIGLEE653 pKa = 4.13LTEE656 pKa = 4.19NAAGNQLIATATFLTPEE673 pKa = 4.03QAGLSANATAAYY685 pKa = 7.53EE686 pKa = 3.99AAVDD690 pKa = 3.96GGLFTPTSSPEE701 pKa = 3.58EE702 pKa = 3.8WSPNVSGAFVVGMAHH717 pKa = 6.25TLMVSNMNIGNRR729 pKa = 11.84LGMLSGMNSGDD740 pKa = 3.98EE741 pKa = 4.04IAASNGMWFSARR753 pKa = 11.84FTDD756 pKa = 4.37AEE758 pKa = 3.84QDD760 pKa = 3.24RR761 pKa = 11.84RR762 pKa = 11.84DD763 pKa = 4.04GIEE766 pKa = 4.8GFDD769 pKa = 4.28ADD771 pKa = 4.0TDD773 pKa = 4.0ALSFGFDD780 pKa = 2.97RR781 pKa = 11.84EE782 pKa = 4.17FGNVVLGVAYY792 pKa = 9.48TRR794 pKa = 11.84GNSDD798 pKa = 3.17AKK800 pKa = 11.36ANDD803 pKa = 3.29ASADD807 pKa = 3.61FEE809 pKa = 4.3MSDD812 pKa = 4.51NLFSLYY818 pKa = 10.72GSYY821 pKa = 10.92DD822 pKa = 2.91GGTWYY827 pKa = 10.85SEE829 pKa = 3.98AVVSVGFGSVDD840 pKa = 3.25SLRR843 pKa = 11.84SVGSDD848 pKa = 4.03DD849 pKa = 3.77YY850 pKa = 12.04AGDD853 pKa = 3.98YY854 pKa = 11.19DD855 pKa = 3.94STSYY859 pKa = 9.57STLVEE864 pKa = 4.38SGCKK868 pKa = 9.38ISAAGWEE875 pKa = 4.21IYY877 pKa = 9.93PYY879 pKa = 9.83LTLEE883 pKa = 4.24YY884 pKa = 10.39SSKK887 pKa = 11.09DD888 pKa = 3.21YY889 pKa = 11.32DD890 pKa = 3.86SYY892 pKa = 11.7TEE894 pKa = 4.17TGGSLALHH902 pKa = 6.09VRR904 pKa = 11.84SKK906 pKa = 10.87DD907 pKa = 3.63YY908 pKa = 11.32EE909 pKa = 4.26VFTAGVGARR918 pKa = 11.84LQKK921 pKa = 10.56DD922 pKa = 4.09FQRR925 pKa = 11.84SWGIVTPEE933 pKa = 3.74VSGQLAYY940 pKa = 10.39DD941 pKa = 3.72VEE943 pKa = 4.32NDD945 pKa = 4.5RR946 pKa = 11.84IVSTANFVGGTTSFVAKK963 pKa = 10.18GIEE966 pKa = 3.9PSEE969 pKa = 4.24TSWDD973 pKa = 3.24LGAALTVASLGEE985 pKa = 4.12QNVSLRR991 pKa = 11.84LGYY994 pKa = 10.49DD995 pKa = 3.12YY996 pKa = 11.49AGRR999 pKa = 11.84QDD1001 pKa = 3.84FAAHH1005 pKa = 6.4SFTGKK1010 pKa = 9.76VRR1012 pKa = 11.84FEE1014 pKa = 4.22FF1015 pKa = 4.5

Molecular weight: 106.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1JZH4|Q1JZH4_DESA6 7-cyano-7-deazaguanine synthase OS=Desulfuromonas acetoxidans (strain DSM 684 / 11070) OX=281689 GN=queC PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.19QPSRR9 pKa = 11.84VSRR12 pKa = 11.84KK13 pKa = 7.52RR14 pKa = 11.84THH16 pKa = 6.3GFRR19 pKa = 11.84KK20 pKa = 9.97RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84NVIKK32 pKa = 10.48RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84NRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.71VLAATISSKK49 pKa = 11.21

Molecular weight: 5.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3204

0

3204

1103131

36

12388

344.3

38.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.798 ± 0.055

1.378 ± 0.024

5.949 ± 0.068

6.333 ± 0.048

3.907 ± 0.039

7.18 ± 0.073

2.391 ± 0.031

5.819 ± 0.035

4.242 ± 0.062

10.766 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.488 ± 0.029

3.448 ± 0.029

4.129 ± 0.049

4.693 ± 0.045

5.637 ± 0.067

6.049 ± 0.066

5.472 ± 0.07

7.352 ± 0.051

1.108 ± 0.02

2.859 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski