Woeseia oceani

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Woeseiaceae; Woeseia

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3565 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A193LBU3|A0A193LBU3_9GAMM Transcriptional regulator OS=Woeseia oceani OX=1548547 GN=BA177_01085 PE=4 SV=1
MM1 pKa = 7.05RR2 pKa = 11.84TKK4 pKa = 10.66LALTAVVASIVAAGCGSGDD23 pKa = 3.52INIDD27 pKa = 3.26PVTSVTNSNNTTNTGGNSGTTNPCASYY54 pKa = 11.12QNTGGQSIQGTYY66 pKa = 10.88DD67 pKa = 3.36GTHH70 pKa = 5.87CTYY73 pKa = 10.97SPSFVDD79 pKa = 3.44AGNNLMVDD87 pKa = 4.26LTLADD92 pKa = 4.27LPNDD96 pKa = 3.93GAHH99 pKa = 6.43LFEE102 pKa = 5.68GSLFVGEE109 pKa = 4.51SHH111 pKa = 7.89DD112 pKa = 4.44NDD114 pKa = 3.99ADD116 pKa = 3.85LAAAGIAEE124 pKa = 4.7GGDD127 pKa = 3.81GPVLTVEE134 pKa = 4.77AGATLALQSSASFMIINRR152 pKa = 11.84GSQLFAVGRR161 pKa = 11.84ADD163 pKa = 3.99APITFTSLSDD173 pKa = 3.24INGTVGPEE181 pKa = 4.69DD182 pKa = 3.58VQQWGGMVINGFGITNKK199 pKa = 9.87CAYY202 pKa = 8.0TGSVATNDD210 pKa = 3.88LATSDD215 pKa = 3.93CHH217 pKa = 8.07VDD219 pKa = 3.23AEE221 pKa = 4.75GAAGLDD227 pKa = 3.53EE228 pKa = 4.32SQYY231 pKa = 11.76GGDD234 pKa = 4.07NNDD237 pKa = 3.79DD238 pKa = 3.31SSGRR242 pKa = 11.84MEE244 pKa = 4.38YY245 pKa = 10.83VVVKK249 pKa = 8.84HH250 pKa = 6.12TGATVGNGDD259 pKa = 4.29EE260 pKa = 4.65LNGITFGGVGRR271 pKa = 11.84NTIVNNLQVYY281 pKa = 7.69STFDD285 pKa = 3.23DD286 pKa = 5.04GIEE289 pKa = 4.08MFGGAVNFNNFVGMYY304 pKa = 9.88VRR306 pKa = 11.84DD307 pKa = 3.76DD308 pKa = 5.08AIDD311 pKa = 3.42IDD313 pKa = 4.06EE314 pKa = 5.49GYY316 pKa = 10.82SGTITNALVIQSEE329 pKa = 4.59TDD331 pKa = 3.22GNHH334 pKa = 6.8CIEE337 pKa = 4.76ADD339 pKa = 4.17GIGGFDD345 pKa = 4.11DD346 pKa = 4.97LLPAEE351 pKa = 4.46VEE353 pKa = 4.1AMISQGINSRR363 pKa = 11.84FVINNLTCIISPNGAATATHH383 pKa = 7.11DD384 pKa = 4.31PGAGWRR390 pKa = 11.84LRR392 pKa = 11.84EE393 pKa = 4.02GLFAEE398 pKa = 4.93INDD401 pKa = 3.93SLLIGSMPANDD412 pKa = 3.04QVSSNDD418 pKa = 3.55NYY420 pKa = 10.93CLRR423 pKa = 11.84IDD425 pKa = 4.77NRR427 pKa = 11.84TQQAALDD434 pKa = 4.04GDD436 pKa = 3.97LTLNSVVFACAEE448 pKa = 3.92ATRR451 pKa = 11.84GQTFADD457 pKa = 3.93GTTTEE462 pKa = 4.22RR463 pKa = 11.84SFAEE467 pKa = 3.74AGGNIFATIANNTSVDD483 pKa = 3.69PTAMNDD489 pKa = 3.07AGLQLLEE496 pKa = 4.34GTQPIYY502 pKa = 10.93SIGYY506 pKa = 5.37TTMQVDD512 pKa = 4.73GAAPAGAPQSGTFIGGLSLSEE533 pKa = 4.38TDD535 pKa = 2.97WTMGWTFGLHH545 pKa = 6.46PDD547 pKa = 3.83NRR549 pKa = 11.84SQALWFEE556 pKa = 4.42

Molecular weight: 57.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A193LLG2|A0A193LLG2_9GAMM UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase OS=Woeseia oceani OX=1548547 GN=murE PE=3 SV=1
MM1 pKa = 7.12ATKK4 pKa = 10.22KK5 pKa = 10.4KK6 pKa = 10.33SSKK9 pKa = 8.96KK10 pKa = 7.15TSKK13 pKa = 10.58RR14 pKa = 11.84KK15 pKa = 7.36TATKK19 pKa = 10.38RR20 pKa = 11.84KK21 pKa = 6.26VTKK24 pKa = 10.48KK25 pKa = 10.01KK26 pKa = 8.2VAKK29 pKa = 10.22RR30 pKa = 11.84KK31 pKa = 8.09VAKK34 pKa = 10.4KK35 pKa = 9.96KK36 pKa = 8.15VAKK39 pKa = 10.35RR40 pKa = 11.84KK41 pKa = 5.75TAKK44 pKa = 10.38KK45 pKa = 9.83KK46 pKa = 8.04VAKK49 pKa = 10.36RR50 pKa = 11.84KK51 pKa = 7.12TKK53 pKa = 10.3KK54 pKa = 9.6KK55 pKa = 10.07AKK57 pKa = 10.03KK58 pKa = 9.6KK59 pKa = 7.94VAKK62 pKa = 10.16RR63 pKa = 11.84KK64 pKa = 7.15TKK66 pKa = 10.59KK67 pKa = 10.07KK68 pKa = 7.92VAKK71 pKa = 10.28RR72 pKa = 11.84KK73 pKa = 7.12TKK75 pKa = 10.45KK76 pKa = 9.7KK77 pKa = 10.16AKK79 pKa = 9.78KK80 pKa = 8.96KK81 pKa = 9.84AKK83 pKa = 10.16KK84 pKa = 9.76KK85 pKa = 7.97VAKK88 pKa = 10.25RR89 pKa = 11.84KK90 pKa = 7.28TKK92 pKa = 10.6KK93 pKa = 8.87KK94 pKa = 8.18TKK96 pKa = 10.19KK97 pKa = 9.75KK98 pKa = 9.46AAKK101 pKa = 9.99KK102 pKa = 8.92KK103 pKa = 6.97TAKK106 pKa = 10.28KK107 pKa = 9.56KK108 pKa = 10.27AKK110 pKa = 9.88KK111 pKa = 9.32KK112 pKa = 9.89AKK114 pKa = 10.21KK115 pKa = 9.86KK116 pKa = 8.69VAKK119 pKa = 9.99KK120 pKa = 8.82KK121 pKa = 10.54AKK123 pKa = 10.25RR124 pKa = 11.84KK125 pKa = 8.65VKK127 pKa = 10.49KK128 pKa = 10.01KK129 pKa = 10.11ASKK132 pKa = 10.4KK133 pKa = 8.89KK134 pKa = 9.15ATRR137 pKa = 11.84KK138 pKa = 6.94TRR140 pKa = 11.84KK141 pKa = 9.32KK142 pKa = 10.45ASKK145 pKa = 10.29KK146 pKa = 9.93KK147 pKa = 10.32

Molecular weight: 16.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3565

0

3565

1201765

51

1901

337.1

36.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.096 ± 0.045

0.916 ± 0.016

6.191 ± 0.032

5.933 ± 0.034

3.704 ± 0.026

7.942 ± 0.034

2.032 ± 0.019

5.198 ± 0.032

3.024 ± 0.033

10.319 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.342 ± 0.019

3.332 ± 0.024

4.563 ± 0.024

3.675 ± 0.025

6.87 ± 0.03

6.169 ± 0.03

5.252 ± 0.031

7.387 ± 0.032

1.331 ± 0.017

2.725 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski