Heterobasidion partitivirus 3

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Alphapartitivirus

Average proteome isoelectric point is 7.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C1KDH7|C1KDH7_9VIRU Putative coat protein OS=Heterobasidion partitivirus 3 OX=631431 PE=4 SV=1
MM1 pKa = 7.8SSIPDD6 pKa = 3.65FASMNEE12 pKa = 3.94SDD14 pKa = 3.17RR15 pKa = 11.84LKK17 pKa = 11.02YY18 pKa = 10.55FEE20 pKa = 4.5EE21 pKa = 4.04QQKK24 pKa = 9.55KK25 pKa = 7.92QKK27 pKa = 10.51EE28 pKa = 4.25LIDD31 pKa = 3.55QSIKK35 pKa = 10.82SKK37 pKa = 8.81QTMSAMRR44 pKa = 11.84VRR46 pKa = 11.84PVFQQARR53 pKa = 11.84NNVTSVNTSSSVPTKK68 pKa = 10.45AVPPQPFSGTSSSANNMLRR87 pKa = 11.84LAFGEE92 pKa = 4.12NPFRR96 pKa = 11.84PKK98 pKa = 10.41QRR100 pKa = 11.84FGQNGFVPDD109 pKa = 4.01SQHH112 pKa = 6.78LFALLSVMDD121 pKa = 4.77AKK123 pKa = 10.3MASTRR128 pKa = 11.84KK129 pKa = 9.17FVEE132 pKa = 4.78GCEE135 pKa = 3.8FWTPLVSQYY144 pKa = 10.91YY145 pKa = 9.98LSVLIFIQVARR156 pKa = 11.84AKK158 pKa = 10.55HH159 pKa = 4.69EE160 pKa = 4.57AGLLSGEE167 pKa = 4.23LADD170 pKa = 5.78VYY172 pKa = 11.59DD173 pKa = 4.85LFCGHH178 pKa = 6.37SPAINLNALPVPGPFLNMLSQVAAHH203 pKa = 6.81IPHH206 pKa = 6.91LVDD209 pKa = 3.99MDD211 pKa = 4.79NICPIVPNNLEE222 pKa = 4.07ATNTSYY228 pKa = 11.68YY229 pKa = 10.41LYY231 pKa = 10.32TGQCQNLRR239 pKa = 11.84GRR241 pKa = 11.84LPNVPYY247 pKa = 10.47ILDD250 pKa = 3.48QLHH253 pKa = 5.58QLGVLLTANPVGIDD267 pKa = 3.21VANQGRR273 pKa = 11.84VLHH276 pKa = 6.46HH277 pKa = 6.78SFLGVPMFDD286 pKa = 2.93ATVAPGNAAQWNSRR300 pKa = 11.84VAFDD304 pKa = 4.79AGFTASGSFIAVDD317 pKa = 3.61PAARR321 pKa = 11.84HH322 pKa = 5.48PFFLNRR328 pKa = 11.84GLLSQITDD336 pKa = 3.41YY337 pKa = 11.53AALINVTRR345 pKa = 11.84PARR348 pKa = 11.84QNAAAVTPSWTQFLGLDD365 pKa = 3.44NMPFFLQVVRR375 pKa = 11.84IMSWYY380 pKa = 9.16SKK382 pKa = 9.36FWQGSSDD389 pKa = 3.6LMSFTPSGHH398 pKa = 6.39TGGQNTFEE406 pKa = 4.6LVNPPASLNAMTAGGRR422 pKa = 11.84FYY424 pKa = 10.85TLDD427 pKa = 4.2LKK429 pKa = 11.42SKK431 pKa = 9.95GYY433 pKa = 10.16SRR435 pKa = 11.84NPLAPDD441 pKa = 4.14ADD443 pKa = 4.23CFDD446 pKa = 4.39AALGPINLSWTPADD460 pKa = 3.51MFAGKK465 pKa = 9.77LARR468 pKa = 11.84NGAIADD474 pKa = 3.88EE475 pKa = 4.6TTLSNTRR482 pKa = 11.84TAGPYY487 pKa = 9.48FSEE490 pKa = 4.69TIVDD494 pKa = 3.29ITGEE498 pKa = 4.17INPSSAYY505 pKa = 10.34AGILNQYY512 pKa = 8.75YY513 pKa = 9.59YY514 pKa = 11.47SSVALKK520 pKa = 10.59NN521 pKa = 3.48

Molecular weight: 57.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C1KDH7|C1KDH7_9VIRU Putative coat protein OS=Heterobasidion partitivirus 3 OX=631431 PE=4 SV=1
MM1 pKa = 7.69KK2 pKa = 10.14IFSTLYY8 pKa = 10.31SSFASFAKK16 pKa = 8.47WTGLTDD22 pKa = 3.21PHH24 pKa = 8.0GFEE27 pKa = 4.62HH28 pKa = 6.69NFYY31 pKa = 9.6FTGYY35 pKa = 9.61ADD37 pKa = 3.78KK38 pKa = 10.63KK39 pKa = 10.02IKK41 pKa = 10.7VSINPRR47 pKa = 11.84FQEE50 pKa = 4.23VYY52 pKa = 10.76DD53 pKa = 4.76DD54 pKa = 3.76YY55 pKa = 11.66QSYY58 pKa = 10.33VGKK61 pKa = 10.41FIDD64 pKa = 3.37KK65 pKa = 10.25HH66 pKa = 7.59LPGHH70 pKa = 5.92MAQKK74 pKa = 10.32IKK76 pKa = 10.51FGYY79 pKa = 7.95HH80 pKa = 5.87HH81 pKa = 7.42PVASLPFMITNLKK94 pKa = 10.55KK95 pKa = 10.7GDD97 pKa = 4.16LPDD100 pKa = 4.13HH101 pKa = 6.57PVPHH105 pKa = 6.86DD106 pKa = 3.4QHH108 pKa = 5.34YY109 pKa = 7.47TAARR113 pKa = 11.84KK114 pKa = 8.69AAADD118 pKa = 3.4AFRR121 pKa = 11.84PPRR124 pKa = 11.84LVRR127 pKa = 11.84PVHH130 pKa = 5.99FADD133 pKa = 3.66LRR135 pKa = 11.84YY136 pKa = 10.32YY137 pKa = 9.43KK138 pKa = 10.13WNWHH142 pKa = 6.31PNVEE146 pKa = 4.18EE147 pKa = 4.93PYY149 pKa = 10.86YY150 pKa = 10.76SDD152 pKa = 4.85PKK154 pKa = 8.47LQQYY158 pKa = 9.07VEE160 pKa = 3.99HH161 pKa = 7.34CYY163 pKa = 11.07ALGLIDD169 pKa = 5.33DD170 pKa = 4.7ARR172 pKa = 11.84LSFGNLKK179 pKa = 10.76DD180 pKa = 3.91FVFMDD185 pKa = 3.51TRR187 pKa = 11.84HH188 pKa = 5.57YY189 pKa = 11.06LHH191 pKa = 7.36LIKK194 pKa = 10.87NGSITDD200 pKa = 3.89NNQLWPIMKK209 pKa = 9.55IHH211 pKa = 6.55VKK213 pKa = 9.79PALTEE218 pKa = 3.8PTEE221 pKa = 4.01TKK223 pKa = 9.93IRR225 pKa = 11.84VIYY228 pKa = 9.95GVSKK232 pKa = 10.58RR233 pKa = 11.84HH234 pKa = 6.15ILAQAMFFWPLFRR247 pKa = 11.84YY248 pKa = 9.91YY249 pKa = 9.75IEE251 pKa = 4.36EE252 pKa = 4.16HH253 pKa = 6.1TSPLLWGNEE262 pKa = 3.87TFTGGMLKK270 pKa = 9.36IHH272 pKa = 6.27NLISVPRR279 pKa = 11.84LYY281 pKa = 10.81SQTYY285 pKa = 8.02LTVDD289 pKa = 3.2WSGFDD294 pKa = 3.54LRR296 pKa = 11.84SLFTIQRR303 pKa = 11.84EE304 pKa = 4.15IFDD307 pKa = 3.37DD308 pKa = 2.94WRR310 pKa = 11.84TYY312 pKa = 11.32FDD314 pKa = 3.47FTAYY318 pKa = 9.66IPTRR322 pKa = 11.84TYY324 pKa = 10.71PDD326 pKa = 3.51SKK328 pKa = 9.65TDD330 pKa = 4.41PIRR333 pKa = 11.84MEE335 pKa = 5.12RR336 pKa = 11.84LWNWQRR342 pKa = 11.84DD343 pKa = 3.86ACFKK347 pKa = 10.6MPFVLPDD354 pKa = 3.04RR355 pKa = 11.84TTYY358 pKa = 11.13ARR360 pKa = 11.84LFRR363 pKa = 11.84SIPSGLFVTQFLDD376 pKa = 3.27SHH378 pKa = 6.99YY379 pKa = 9.9NLIMIYY385 pKa = 9.88TILSAMGFDD394 pKa = 3.64ITNLMILVQGDD405 pKa = 3.69DD406 pKa = 3.75SLIHH410 pKa = 6.62LKK412 pKa = 10.59FFLPADD418 pKa = 3.26QHH420 pKa = 6.72DD421 pKa = 4.03AFKK424 pKa = 11.49AEE426 pKa = 4.15FEE428 pKa = 4.29RR429 pKa = 11.84LAKK432 pKa = 10.7YY433 pKa = 10.63YY434 pKa = 9.68FDD436 pKa = 5.56HH437 pKa = 7.21IARR440 pKa = 11.84PEE442 pKa = 4.02KK443 pKa = 9.8THH445 pKa = 5.29VTNSPNEE452 pKa = 4.07VEE454 pKa = 4.28VLGYY458 pKa = 9.19TNNNGYY464 pKa = 9.58PSRR467 pKa = 11.84DD468 pKa = 3.2MTKK471 pKa = 10.55LVAQLYY477 pKa = 9.88HH478 pKa = 6.62PRR480 pKa = 11.84NVDD483 pKa = 3.01KK484 pKa = 10.98TSWKK488 pKa = 9.47SLLMAKK494 pKa = 9.82VCGFAYY500 pKa = 10.29ASCYY504 pKa = 9.75QDD506 pKa = 3.06SQVIDD511 pKa = 4.18LLRR514 pKa = 11.84SIYY517 pKa = 10.99NNLASKK523 pKa = 10.39GFKK526 pKa = 9.49PKK528 pKa = 9.97SGRR531 pKa = 11.84VMRR534 pKa = 11.84DD535 pKa = 2.66IILFGEE541 pKa = 4.59SEE543 pKa = 4.55FEE545 pKa = 4.17VPTDD549 pKa = 4.18HH550 pKa = 7.52FPTLNDD556 pKa = 2.85VTKK559 pKa = 10.09YY560 pKa = 9.69FRR562 pKa = 11.84RR563 pKa = 11.84PYY565 pKa = 10.82VRR567 pKa = 11.84TQRR570 pKa = 11.84DD571 pKa = 3.12ADD573 pKa = 3.77SYY575 pKa = 10.3FPSWHH580 pKa = 6.42FNDD583 pKa = 3.7VFF585 pKa = 4.39

Molecular weight: 68.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1106

521

585

553.0

62.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.595 ± 1.685

0.814 ± 0.103

5.967 ± 0.961

3.074 ± 0.273

6.781 ± 0.587

5.154 ± 0.834

3.255 ± 0.944

4.882 ± 0.602

4.611 ± 1.088

8.951 ± 0.321

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.712 ± 0.118

5.335 ± 0.977

6.51 ± 0.282

4.069 ± 0.787

4.973 ± 0.53

7.233 ± 1.127

5.877 ± 0.22

5.696 ± 0.451

1.627 ± 0.336

4.882 ± 1.144
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski