Paraurantiacibacter namhicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Paraurantiacibacter

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2513 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C7D926|A0A1C7D926_9SPHN Uncharacterized protein OS=Paraurantiacibacter namhicola OX=645517 GN=A6F65_01562 PE=4 SV=1
MM1 pKa = 7.87RR2 pKa = 11.84IAVVLFLSCLLLACTDD18 pKa = 3.59QRR20 pKa = 11.84DD21 pKa = 3.94AMPDD25 pKa = 3.3ASSEE29 pKa = 4.28SADD32 pKa = 3.4GSGGGNLALRR42 pKa = 11.84GATNAVEE49 pKa = 4.45LQPILYY55 pKa = 9.45PDD57 pKa = 3.8IEE59 pKa = 5.31ANDD62 pKa = 3.98LFGAGCNFASGKK74 pKa = 10.7SMAAVVLAQSDD85 pKa = 4.13YY86 pKa = 11.71AAIKK90 pKa = 10.03IDD92 pKa = 4.21GEE94 pKa = 4.41VLQLGPAEE102 pKa = 4.23GTGEE106 pKa = 4.26LEE108 pKa = 3.84LGARR112 pKa = 11.84DD113 pKa = 3.9TYY115 pKa = 11.44ASEE118 pKa = 4.59DD119 pKa = 3.65YY120 pKa = 10.64RR121 pKa = 11.84LEE123 pKa = 4.18LALQGGGEE131 pKa = 4.17SSGYY135 pKa = 8.03EE136 pKa = 3.71TVDD139 pKa = 3.56FQGAVRR145 pKa = 11.84LSDD148 pKa = 3.6ASGNPVYY155 pKa = 10.2ATTGTAQCGSS165 pKa = 3.65

Molecular weight: 16.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C7D4J8|A0A1C7D4J8_9SPHN Chitooligosaccharide deacetylase OS=Paraurantiacibacter namhicola OX=645517 GN=A6F65_00057 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.98GFFARR21 pKa = 11.84KK22 pKa = 7.93KK23 pKa = 7.75TVGGRR28 pKa = 11.84KK29 pKa = 7.9VLRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.02KK41 pKa = 10.61LSAA44 pKa = 4.03

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2513

0

2513

798812

31

1883

317.9

34.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.858 ± 0.07

0.833 ± 0.016

6.287 ± 0.038

6.307 ± 0.05

3.642 ± 0.032

9.138 ± 0.042

1.897 ± 0.027

4.728 ± 0.032

3.114 ± 0.041

9.728 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.636 ± 0.02

2.495 ± 0.029

5.182 ± 0.035

3.233 ± 0.022

6.905 ± 0.043

5.212 ± 0.034

5.1 ± 0.039

7.037 ± 0.037

1.442 ± 0.023

2.227 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski