Amino acid dipepetide frequency for Measles virus (strain Ichinose-B95a) (MeV) (Subacute sclerose panencephalitis virus)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.038AlaAla: 4.038 ± 0.457
0.769AlaCys: 0.769 ± 0.35
2.692AlaAsp: 2.692 ± 0.659
4.807AlaGlu: 4.807 ± 1.072
1.73AlaPhe: 1.73 ± 0.615
3.653AlaGly: 3.653 ± 1.087
1.154AlaHis: 1.154 ± 0.453
4.038AlaIle: 4.038 ± 0.848
2.5AlaLys: 2.5 ± 0.351
7.306AlaLeu: 7.306 ± 1.123
1.923AlaMet: 1.923 ± 0.761
2.115AlaAsn: 2.115 ± 0.55
3.076AlaPro: 3.076 ± 0.785
1.346AlaGln: 1.346 ± 0.393
4.807AlaArg: 4.807 ± 0.788
5.576AlaSer: 5.576 ± 1.996
2.5AlaThr: 2.5 ± 0.628
5.576AlaVal: 5.576 ± 1.324
0.769AlaTrp: 0.769 ± 0.376
1.73AlaTyr: 1.73 ± 0.721
0.0AlaXaa: 0.0 ± 0.0
Cys
1.154CysAla: 1.154 ± 0.438
0.577CysCys: 0.577 ± 0.411
0.577CysAsp: 0.577 ± 0.234
0.769CysGlu: 0.769 ± 0.317
1.346CysPhe: 1.346 ± 0.451
0.961CysGly: 0.961 ± 0.513
0.577CysHis: 0.577 ± 0.373
0.769CysIle: 0.769 ± 0.31
1.538CysLys: 1.538 ± 0.457
1.346CysLeu: 1.346 ± 0.358
0.192CysMet: 0.192 ± 0.202
0.961CysAsn: 0.961 ± 0.28
0.769CysPro: 0.769 ± 0.246
0.961CysGln: 0.961 ± 0.628
0.577CysArg: 0.577 ± 0.389
1.154CysSer: 1.154 ± 0.309
0.961CysThr: 0.961 ± 0.475
1.538CysVal: 1.538 ± 0.585
0.0CysTrp: 0.0 ± 0.0
1.154CysTyr: 1.154 ± 0.326
0.0CysXaa: 0.0 ± 0.0
Asp
3.076AspAla: 3.076 ± 0.751
0.577AspCys: 0.577 ± 0.253
4.23AspAsp: 4.23 ± 1.04
2.5AspGlu: 2.5 ± 0.276
0.961AspPhe: 0.961 ± 0.371
1.73AspGly: 1.73 ± 0.373
1.73AspHis: 1.73 ± 0.526
4.038AspIle: 4.038 ± 0.912
2.5AspLys: 2.5 ± 0.581
5.768AspLeu: 5.768 ± 0.754
1.154AspMet: 1.154 ± 0.3
3.076AspAsn: 3.076 ± 0.444
3.845AspPro: 3.845 ± 0.81
1.923AspGln: 1.923 ± 0.752
4.422AspArg: 4.422 ± 1.14
3.653AspSer: 3.653 ± 0.645
3.845AspThr: 3.845 ± 0.853
4.614AspVal: 4.614 ± 0.551
0.385AspTrp: 0.385 ± 0.232
1.346AspTyr: 1.346 ± 0.223
0.0AspXaa: 0.0 ± 0.0
Glu
3.653GluAla: 3.653 ± 0.854
1.538GluCys: 1.538 ± 0.703
3.653GluAsp: 3.653 ± 0.827
3.845GluGlu: 3.845 ± 1.545
1.923GluPhe: 1.923 ± 0.566
3.269GluGly: 3.269 ± 1.239
0.961GluHis: 0.961 ± 0.558
4.807GluIle: 4.807 ± 0.824
2.5GluLys: 2.5 ± 0.828
6.729GluLeu: 6.729 ± 0.841
0.961GluMet: 0.961 ± 0.379
1.923GluAsn: 1.923 ± 0.653
2.307GluPro: 2.307 ± 0.783
1.923GluGln: 1.923 ± 0.416
1.154GluArg: 1.154 ± 0.277
5.384GluSer: 5.384 ± 1.047
5.576GluThr: 5.576 ± 1.383
3.076GluVal: 3.076 ± 0.36
1.346GluTrp: 1.346 ± 0.343
0.577GluTyr: 0.577 ± 0.283
0.0GluXaa: 0.0 ± 0.0
Phe
1.538PheAla: 1.538 ± 0.37
0.385PheCys: 0.385 ± 0.191
1.346PheAsp: 1.346 ± 0.348
1.154PheGlu: 1.154 ± 0.397
1.154PhePhe: 1.154 ± 0.753
1.73PheGly: 1.73 ± 0.55
0.769PheHis: 0.769 ± 0.196
3.076PheIle: 3.076 ± 0.982
1.73PheLys: 1.73 ± 0.463
2.884PheLeu: 2.884 ± 1.014
1.346PheMet: 1.346 ± 0.626
1.538PheAsn: 1.538 ± 0.457
0.769PhePro: 0.769 ± 0.32
0.961PheGln: 0.961 ± 0.314
2.884PheArg: 2.884 ± 0.74
1.923PheSer: 1.923 ± 0.475
1.73PheThr: 1.73 ± 0.758
2.692PheVal: 2.692 ± 1.136
0.769PheTrp: 0.769 ± 0.502
0.769PheTyr: 0.769 ± 0.39
0.0PheXaa: 0.0 ± 0.0
Gly
2.5GlyAla: 2.5 ± 0.743
0.385GlyCys: 0.385 ± 0.251
4.038GlyAsp: 4.038 ± 0.651
4.23GlyGlu: 4.23 ± 1.428
2.884GlyPhe: 2.884 ± 0.718
4.999GlyGly: 4.999 ± 0.951
1.73GlyHis: 1.73 ± 0.578
4.038GlyIle: 4.038 ± 1.113
2.692GlyLys: 2.692 ± 0.763
8.844GlyLeu: 8.844 ± 0.968
2.307GlyMet: 2.307 ± 0.694
3.076GlyAsn: 3.076 ± 0.689
2.5GlyPro: 2.5 ± 0.689
3.269GlyGln: 3.269 ± 0.99
3.076GlyArg: 3.076 ± 0.8
8.268GlySer: 8.268 ± 0.784
3.269GlyThr: 3.269 ± 0.931
5.384GlyVal: 5.384 ± 1.95
0.385GlyTrp: 0.385 ± 0.192
2.307GlyTyr: 2.307 ± 0.329
0.0GlyXaa: 0.0 ± 0.0
His
1.73HisAla: 1.73 ± 0.467
0.769HisCys: 0.769 ± 0.313
1.538HisAsp: 1.538 ± 0.836
1.538HisGlu: 1.538 ± 0.481
0.385HisPhe: 0.385 ± 0.191
0.961HisGly: 0.961 ± 0.269
0.385HisHis: 0.385 ± 0.251
1.923HisIle: 1.923 ± 0.585
0.577HisLys: 0.577 ± 0.283
1.923HisLeu: 1.923 ± 0.664
0.577HisMet: 0.577 ± 0.253
0.577HisAsn: 0.577 ± 0.293
1.154HisPro: 1.154 ± 0.422
1.346HisGln: 1.346 ± 0.489
2.692HisArg: 2.692 ± 0.843
1.538HisSer: 1.538 ± 0.472
1.154HisThr: 1.154 ± 0.594
1.73HisVal: 1.73 ± 0.549
0.385HisTrp: 0.385 ± 0.338
0.577HisTyr: 0.577 ± 0.377
0.0HisXaa: 0.0 ± 0.0
Ile
4.807IleAla: 4.807 ± 1.309
0.577IleCys: 0.577 ± 0.234
3.461IleAsp: 3.461 ± 0.59
3.461IleGlu: 3.461 ± 1.093
1.346IlePhe: 1.346 ± 0.652
5.96IleGly: 5.96 ± 1.317
2.307IleHis: 2.307 ± 0.512
3.845IleIle: 3.845 ± 0.753
6.153IleLys: 6.153 ± 0.565
6.153IleLeu: 6.153 ± 1.625
1.346IleMet: 1.346 ± 0.783
4.038IleAsn: 4.038 ± 0.87
3.653IlePro: 3.653 ± 0.615
2.5IleGln: 2.5 ± 0.598
4.614IleArg: 4.614 ± 0.474
6.153IleSer: 6.153 ± 1.104
4.614IleThr: 4.614 ± 0.469
3.845IleVal: 3.845 ± 0.83
0.577IleTrp: 0.577 ± 0.509
1.923IleTyr: 1.923 ± 0.722
0.0IleXaa: 0.0 ± 0.0
Lys
2.692LysAla: 2.692 ± 0.582
0.577LysCys: 0.577 ± 0.228
3.269LysAsp: 3.269 ± 0.968
4.614LysGlu: 4.614 ± 1.143
1.73LysPhe: 1.73 ± 0.487
4.807LysGly: 4.807 ± 0.961
0.769LysHis: 0.769 ± 0.363
3.461LysIle: 3.461 ± 0.782
2.884LysLys: 2.884 ± 0.734
6.153LysLeu: 6.153 ± 0.763
1.346LysMet: 1.346 ± 0.584
1.346LysAsn: 1.346 ± 0.37
2.115LysPro: 2.115 ± 1.243
1.154LysGln: 1.154 ± 0.408
2.307LysArg: 2.307 ± 0.59
3.076LysSer: 3.076 ± 0.472
1.923LysThr: 1.923 ± 0.807
3.653LysVal: 3.653 ± 0.562
0.385LysTrp: 0.385 ± 0.263
1.73LysTyr: 1.73 ± 0.549
0.0LysXaa: 0.0 ± 0.0
Leu
7.883LeuAla: 7.883 ± 1.008
1.923LeuCys: 1.923 ± 0.552
5.191LeuAsp: 5.191 ± 0.701
7.114LeuGlu: 7.114 ± 1.258
3.461LeuPhe: 3.461 ± 0.693
7.883LeuGly: 7.883 ± 1.687
3.269LeuHis: 3.269 ± 0.794
7.499LeuIle: 7.499 ± 1.484
7.691LeuLys: 7.691 ± 1.558
10.383LeuLeu: 10.383 ± 1.168
3.461LeuMet: 3.461 ± 0.421
3.845LeuAsn: 3.845 ± 0.485
2.5LeuPro: 2.5 ± 0.562
3.076LeuGln: 3.076 ± 1.267
5.768LeuArg: 5.768 ± 1.249
9.421LeuSer: 9.421 ± 2.067
5.384LeuThr: 5.384 ± 0.584
5.96LeuVal: 5.96 ± 1.503
1.154LeuTrp: 1.154 ± 0.504
2.692LeuTyr: 2.692 ± 0.889
0.0LeuXaa: 0.0 ± 0.0
Met
2.115MetAla: 2.115 ± 0.526
0.192MetCys: 0.192 ± 0.249
0.769MetAsp: 0.769 ± 0.239
0.385MetGlu: 0.385 ± 0.263
0.769MetPhe: 0.769 ± 0.278
2.115MetGly: 2.115 ± 0.482
0.577MetHis: 0.577 ± 0.222
2.115MetIle: 2.115 ± 0.324
1.346MetLys: 1.346 ± 0.435
2.115MetLeu: 2.115 ± 0.694
0.0MetMet: 0.0 ± 0.0
1.538MetAsn: 1.538 ± 0.298
1.154MetPro: 1.154 ± 0.381
0.0MetGln: 0.0 ± 0.0
0.961MetArg: 0.961 ± 0.461
1.923MetSer: 1.923 ± 0.563
3.076MetThr: 3.076 ± 0.435
2.115MetVal: 2.115 ± 0.658
0.577MetTrp: 0.577 ± 0.284
1.154MetTyr: 1.154 ± 0.3
0.0MetXaa: 0.0 ± 0.0
Asn
2.692AsnAla: 2.692 ± 0.984
0.961AsnCys: 0.961 ± 0.615
1.73AsnAsp: 1.73 ± 0.345
1.923AsnGlu: 1.923 ± 0.414
1.538AsnPhe: 1.538 ± 0.28
2.5AsnGly: 2.5 ± 0.645
0.577AsnHis: 0.577 ± 0.257
3.076AsnIle: 3.076 ± 1.145
1.73AsnLys: 1.73 ± 0.73
5.768AsnLeu: 5.768 ± 0.903
1.154AsnMet: 1.154 ± 0.399
1.923AsnAsn: 1.923 ± 0.497
3.461AsnPro: 3.461 ± 0.936
3.076AsnGln: 3.076 ± 0.61
1.923AsnArg: 1.923 ± 0.477
2.884AsnSer: 2.884 ± 0.49
0.769AsnThr: 0.769 ± 0.239
2.692AsnVal: 2.692 ± 0.557
0.577AsnTrp: 0.577 ± 0.377
0.961AsnTyr: 0.961 ± 0.461
0.0AsnXaa: 0.0 ± 0.0
Pro
2.115ProAla: 2.115 ± 0.429
0.385ProCys: 0.385 ± 0.354
2.692ProAsp: 2.692 ± 0.862
3.076ProGlu: 3.076 ± 0.443
0.577ProPhe: 0.577 ± 0.253
3.461ProGly: 3.461 ± 0.768
0.961ProHis: 0.961 ± 0.461
5.384ProIle: 5.384 ± 0.751
2.307ProLys: 2.307 ± 0.458
3.845ProLeu: 3.845 ± 0.981
1.154ProMet: 1.154 ± 0.309
1.923ProAsn: 1.923 ± 0.371
3.461ProPro: 3.461 ± 0.817
1.538ProGln: 1.538 ± 0.684
2.884ProArg: 2.884 ± 0.698
4.807ProSer: 4.807 ± 1.392
2.307ProThr: 2.307 ± 0.78
2.307ProVal: 2.307 ± 0.6
0.385ProTrp: 0.385 ± 0.306
1.923ProTyr: 1.923 ± 0.751
0.0ProXaa: 0.0 ± 0.0
Gln
3.845GlnAla: 3.845 ± 1.319
1.346GlnCys: 1.346 ± 0.621
2.884GlnAsp: 2.884 ± 0.89
1.538GlnGlu: 1.538 ± 1.009
0.577GlnPhe: 0.577 ± 0.373
2.884GlnGly: 2.884 ± 0.618
0.385GlnHis: 0.385 ± 0.232
2.307GlnIle: 2.307 ± 0.612
0.961GlnLys: 0.961 ± 0.59
3.076GlnLeu: 3.076 ± 0.686
0.769GlnMet: 0.769 ± 0.263
2.115GlnAsn: 2.115 ± 0.499
1.346GlnPro: 1.346 ± 0.436
1.73GlnGln: 1.73 ± 0.511
2.307GlnArg: 2.307 ± 0.679
2.884GlnSer: 2.884 ± 1.007
0.769GlnThr: 0.769 ± 0.264
2.115GlnVal: 2.115 ± 0.531
0.385GlnTrp: 0.385 ± 0.251
0.577GlnTyr: 0.577 ± 0.428
0.0GlnXaa: 0.0 ± 0.0
Arg
4.999ArgAla: 4.999 ± 1.225
0.961ArgCys: 0.961 ± 0.28
3.076ArgAsp: 3.076 ± 0.516
3.461ArgGlu: 3.461 ± 0.976
2.115ArgPhe: 2.115 ± 0.473
4.614ArgGly: 4.614 ± 0.67
1.923ArgHis: 1.923 ± 0.365
4.038ArgIle: 4.038 ± 0.963
2.884ArgLys: 2.884 ± 0.784
7.883ArgLeu: 7.883 ± 1.485
1.346ArgMet: 1.346 ± 0.452
1.73ArgAsn: 1.73 ± 0.36
1.73ArgPro: 1.73 ± 0.463
1.73ArgGln: 1.73 ± 0.469
4.422ArgArg: 4.422 ± 1.014
5.576ArgSer: 5.576 ± 1.061
2.115ArgThr: 2.115 ± 0.607
3.845ArgVal: 3.845 ± 0.664
0.385ArgTrp: 0.385 ± 0.293
1.923ArgTyr: 1.923 ± 0.634
0.0ArgXaa: 0.0 ± 0.0
Ser
4.422SerAla: 4.422 ± 1.081
1.538SerCys: 1.538 ± 0.612
5.191SerAsp: 5.191 ± 1.396
3.845SerGlu: 3.845 ± 1.188
2.884SerPhe: 2.884 ± 0.68
8.46SerGly: 8.46 ± 1.478
1.923SerHis: 1.923 ± 0.658
5.576SerIle: 5.576 ± 0.701
3.653SerLys: 3.653 ± 0.598
8.075SerLeu: 8.075 ± 0.654
2.5SerMet: 2.5 ± 0.441
3.076SerAsn: 3.076 ± 0.958
2.884SerPro: 2.884 ± 0.661
3.076SerGln: 3.076 ± 0.758
7.883SerArg: 7.883 ± 1.354
7.499SerSer: 7.499 ± 0.736
6.153SerThr: 6.153 ± 0.898
3.269SerVal: 3.269 ± 0.735
1.154SerTrp: 1.154 ± 0.425
2.884SerTyr: 2.884 ± 1.169
0.0SerXaa: 0.0 ± 0.0
Thr
3.845ThrAla: 3.845 ± 1.213
1.538ThrCys: 1.538 ± 0.534
3.653ThrAsp: 3.653 ± 0.666
3.076ThrGlu: 3.076 ± 0.812
0.961ThrPhe: 0.961 ± 0.268
4.038ThrGly: 4.038 ± 0.696
0.961ThrHis: 0.961 ± 0.422
4.038ThrIle: 4.038 ± 0.816
1.154ThrLys: 1.154 ± 0.533
6.153ThrLeu: 6.153 ± 1.506
1.154ThrMet: 1.154 ± 0.308
3.076ThrAsn: 3.076 ± 1.024
2.884ThrPro: 2.884 ± 0.641
1.538ThrGln: 1.538 ± 0.422
3.076ThrArg: 3.076 ± 0.652
4.038ThrSer: 4.038 ± 0.279
3.461ThrThr: 3.461 ± 0.587
2.692ThrVal: 2.692 ± 0.788
0.961ThrTrp: 0.961 ± 0.431
2.692ThrTyr: 2.692 ± 0.718
0.0ThrXaa: 0.0 ± 0.0
Val
2.692ValAla: 2.692 ± 0.511
1.154ValCys: 1.154 ± 0.397
2.115ValAsp: 2.115 ± 0.532
4.422ValGlu: 4.422 ± 0.536
2.307ValPhe: 2.307 ± 0.68
4.422ValGly: 4.422 ± 0.816
1.154ValHis: 1.154 ± 0.273
5.576ValIle: 5.576 ± 1.046
3.076ValLys: 3.076 ± 0.688
6.537ValLeu: 6.537 ± 1.395
0.769ValMet: 0.769 ± 0.272
2.115ValAsn: 2.115 ± 0.546
4.422ValPro: 4.422 ± 0.531
2.307ValGln: 2.307 ± 0.578
3.461ValArg: 3.461 ± 0.845
5.96ValSer: 5.96 ± 0.948
3.269ValThr: 3.269 ± 0.854
2.5ValVal: 2.5 ± 0.931
0.192ValTrp: 0.192 ± 0.202
3.461ValTyr: 3.461 ± 0.424
0.0ValXaa: 0.0 ± 0.0
Trp
1.154TrpAla: 1.154 ± 0.506
0.577TrpCys: 0.577 ± 0.475
0.577TrpAsp: 0.577 ± 0.227
0.192TrpGlu: 0.192 ± 0.243
0.961TrpPhe: 0.961 ± 0.363
0.577TrpGly: 0.577 ± 0.276
0.192TrpHis: 0.192 ± 0.126
0.577TrpIle: 0.577 ± 0.35
0.577TrpLys: 0.577 ± 0.253
0.769TrpLeu: 0.769 ± 0.246
0.0TrpMet: 0.0 ± 0.0
0.769TrpAsn: 0.769 ± 0.383
0.577TrpPro: 0.577 ± 0.284
0.192TrpGln: 0.192 ± 0.243
0.577TrpArg: 0.577 ± 0.355
0.961TrpSer: 0.961 ± 0.314
0.385TrpThr: 0.385 ± 0.207
0.769TrpVal: 0.769 ± 0.246
0.0TrpTrp: 0.0 ± 0.0
0.577TrpTyr: 0.577 ± 0.243
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.154TyrAla: 1.154 ± 0.259
1.154TyrCys: 1.154 ± 0.404
2.692TyrAsp: 2.692 ± 0.517
1.154TyrGlu: 1.154 ± 0.753
1.538TyrPhe: 1.538 ± 0.593
1.154TyrGly: 1.154 ± 0.506
1.154TyrHis: 1.154 ± 0.541
1.154TyrIle: 1.154 ± 0.593
1.538TyrLys: 1.538 ± 0.539
3.845TyrLeu: 3.845 ± 1.187
1.346TyrMet: 1.346 ± 0.486
1.154TyrAsn: 1.154 ± 0.289
2.884TyrPro: 2.884 ± 0.655
1.154TyrGln: 1.154 ± 0.308
0.961TyrArg: 0.961 ± 0.289
3.461TyrSer: 3.461 ± 1.214
1.73TyrThr: 1.73 ± 0.604
1.538TyrVal: 1.538 ± 0.692
0.192TyrTrp: 0.192 ± 0.202
1.154TyrTyr: 1.154 ± 0.275
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 8 proteins (5202 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski