Pandoraea thiooxydans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3963 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0G3ELZ5|A0A0G3ELZ5_9BURK 4-hydroxyphenylacetate isomerase OS=Pandoraea thiooxydans OX=445709 GN=ABW99_06770 PE=4 SV=1
MM1 pKa = 7.86PEE3 pKa = 3.67ATEE6 pKa = 4.19CLVIASQPLDD16 pKa = 3.62CLRR19 pKa = 11.84VSLADD24 pKa = 3.64AACVLIPAFSDD35 pKa = 3.93GPAAVGLSSRR45 pKa = 11.84GLPLSGDD52 pKa = 3.7IAWAALCVGG61 pKa = 4.32

Molecular weight: 6.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0G3ENV5|A0A0G3ENV5_9BURK Nickel transporter OS=Pandoraea thiooxydans OX=445709 GN=ABW99_05110 PE=3 SV=1
MM1 pKa = 6.99TKK3 pKa = 10.55KK4 pKa = 10.41NAFTSAARR12 pKa = 11.84LLAAFSIVLSSFVGCAATPISPHH35 pKa = 6.55ADD37 pKa = 2.97RR38 pKa = 11.84AVGQPGTGIAGLTGRR53 pKa = 11.84WVLLSWVGQHH63 pKa = 7.04ASPPPAARR71 pKa = 11.84NVTLVLSKK79 pKa = 10.91DD80 pKa = 3.31GAYY83 pKa = 10.29GGSGGCNRR91 pKa = 11.84IFGQYY96 pKa = 9.59HH97 pKa = 6.2VGPAHH102 pKa = 5.53QQISVNPPATTRR114 pKa = 11.84MSCPVDD120 pKa = 3.46VMAFEE125 pKa = 4.65SRR127 pKa = 11.84FLATLAHH134 pKa = 5.78VNRR137 pKa = 11.84FEE139 pKa = 4.26LTGNTLVLFVRR150 pKa = 11.84DD151 pKa = 3.56TDD153 pKa = 3.45RR154 pKa = 11.84LTFARR159 pKa = 11.84QVIPRR164 pKa = 11.84QGSLADD170 pKa = 3.7NAPGKK175 pKa = 10.96SMASGRR181 pKa = 11.84TPAA184 pKa = 4.28

Molecular weight: 19.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3963

0

3963

1287374

27

3911

324.8

35.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.758 ± 0.05

0.987 ± 0.011

5.15 ± 0.033

5.026 ± 0.04

3.653 ± 0.024

8.264 ± 0.041

2.44 ± 0.016

4.858 ± 0.025

2.936 ± 0.031

10.895 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.442 ± 0.016

2.643 ± 0.027

5.176 ± 0.025

3.953 ± 0.025

7.036 ± 0.038

5.285 ± 0.029

5.134 ± 0.035

7.499 ± 0.033

1.392 ± 0.018

2.473 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski