Devosia sp. I507

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3776 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2L1S497|A0A2L1S497_9RHIZ N-acylglucosamine-6-phosphate 2-epimerase OS=Devosia sp. I507 OX=2083786 GN=C4375_05615 PE=4 SV=1
MM1 pKa = 7.51FFPSDD6 pKa = 3.75PLSEE10 pKa = 4.14IVAHH14 pKa = 5.98FLGYY18 pKa = 9.4FQIAVEE24 pKa = 4.04DD25 pKa = 3.52MKK27 pKa = 11.39VRR29 pKa = 11.84LEE31 pKa = 3.88MALAEE36 pKa = 4.45HH37 pKa = 6.45EE38 pKa = 4.41AEE40 pKa = 4.97AGLEE44 pKa = 4.03APEE47 pKa = 4.03MQQVSVDD54 pKa = 3.71VLQTYY59 pKa = 11.04ALGNYY64 pKa = 9.57APGVFYY70 pKa = 10.74APPEE74 pKa = 3.72FLIRR78 pKa = 11.84GEE80 pKa = 4.37VMFGPTNIGLANTPDD95 pKa = 3.72FTASEE100 pKa = 4.34LDD102 pKa = 3.66SPLSQWPTGPGDD114 pKa = 3.48IVIPLIGTEE123 pKa = 4.15PGSVIAVFSQTISLSDD139 pKa = 3.62DD140 pKa = 3.46DD141 pKa = 4.7VFVMGTLDD149 pKa = 3.66EE150 pKa = 4.54PLVYY154 pKa = 10.44QSGSDD159 pKa = 3.34AGLLGLQAASNAILGPIGSGPGMTSHH185 pKa = 7.0GDD187 pKa = 3.21VPLVMDD193 pKa = 5.24AVHH196 pKa = 6.35ATAKK200 pKa = 10.15AHH202 pKa = 5.89QSNPDD207 pKa = 3.34TQFEE211 pKa = 4.36QVEE214 pKa = 4.86SLTGTYY220 pKa = 10.95VNGKK224 pKa = 9.63LEE226 pKa = 4.22TEE228 pKa = 4.09APEE231 pKa = 4.27LTDD234 pKa = 4.43ALPSHH239 pKa = 6.6LQAEE243 pKa = 4.9AEE245 pKa = 4.35DD246 pKa = 4.68APPPDD251 pKa = 4.19TIKK254 pKa = 9.94VTSEE258 pKa = 4.0HH259 pKa = 6.36EE260 pKa = 3.68AHH262 pKa = 6.4IQIEE266 pKa = 4.1NDD268 pKa = 2.96ATQGSVTYY276 pKa = 10.62NSGGNFLVNEE286 pKa = 4.04AVVLNGGLVGTHH298 pKa = 5.85FVVGGNFHH306 pKa = 6.34QLDD309 pKa = 4.78AIIQTNAFSDD319 pKa = 3.51TDD321 pKa = 3.85YY322 pKa = 11.74VNDD325 pKa = 5.1DD326 pKa = 4.13FPLDD330 pKa = 3.61AQAGGGTKK338 pKa = 10.07AVNVASFVQEE348 pKa = 4.1TFDD351 pKa = 4.08AAGDD355 pKa = 3.74NAEE358 pKa = 4.57ANPGVMPQNWQVTCVSGDD376 pKa = 3.68VIFLEE381 pKa = 4.43WMKK384 pKa = 10.85QLTFMSDD391 pKa = 2.73EE392 pKa = 4.28DD393 pKa = 4.24VGVLTATGSDD403 pKa = 3.12AMVTSGEE410 pKa = 4.23NIGLNSVNFANIGSLFDD427 pKa = 5.1LILVGGNVFDD437 pKa = 5.81ANVIVQNNILYY448 pKa = 10.67DD449 pKa = 3.7NDD451 pKa = 4.5TITMLGAGDD460 pKa = 4.62DD461 pKa = 4.13GDD463 pKa = 4.2YY464 pKa = 10.96SASGSLNTSNNLLWNQASIHH484 pKa = 5.78NVGATEE490 pKa = 4.16VKK492 pKa = 10.52SGVSDD497 pKa = 3.8HH498 pKa = 6.87YY499 pKa = 11.07KK500 pKa = 10.92DD501 pKa = 5.41AMDD504 pKa = 5.06GLANGNKK511 pKa = 9.86SMPASFYY518 pKa = 10.53AAEE521 pKa = 4.46DD522 pKa = 4.02FEE524 pKa = 6.13GIAIPRR530 pKa = 11.84VLFVSGSIYY539 pKa = 10.05DD540 pKa = 3.51LRR542 pKa = 11.84YY543 pKa = 9.69IEE545 pKa = 4.06QTNILGDD552 pKa = 3.72ADD554 pKa = 4.71FVALQKK560 pKa = 10.89KK561 pKa = 9.88AFLDD565 pKa = 4.1GEE567 pKa = 4.58PATEE571 pKa = 4.01WNIDD575 pKa = 3.45TGSNALVNMAAIKK588 pKa = 10.58DD589 pKa = 3.82YY590 pKa = 9.86DD591 pKa = 3.83TFGDD595 pKa = 4.07SIEE598 pKa = 4.37VGGDD602 pKa = 3.18HH603 pKa = 6.77YY604 pKa = 11.49SDD606 pKa = 5.3SILIQANILEE616 pKa = 4.43AQGDD620 pKa = 4.04GDD622 pKa = 5.57DD623 pKa = 5.34DD624 pKa = 4.4DD625 pKa = 6.61ALVSEE630 pKa = 4.99VVAFLDD636 pKa = 3.62HH637 pKa = 6.94TEE639 pKa = 4.2TLADD643 pKa = 3.81TPDD646 pKa = 3.44YY647 pKa = 11.0SALGDD652 pKa = 3.92TTHH655 pKa = 7.69DD656 pKa = 3.77AAPVDD661 pKa = 4.09LMQSVLAA668 pKa = 4.92

Molecular weight: 70.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2L1SCC4|A0A2L1SCC4_9RHIZ Choline phosphatase OS=Devosia sp. I507 OX=2083786 GN=cls PE=4 SV=1
MM1 pKa = 6.91TRR3 pKa = 11.84APGRR7 pKa = 11.84PWSRR11 pKa = 11.84PRR13 pKa = 11.84TLRR16 pKa = 11.84PPRR19 pKa = 11.84LRR21 pKa = 11.84TSRR24 pKa = 11.84PARR27 pKa = 11.84PRR29 pKa = 11.84PRR31 pKa = 11.84HH32 pKa = 4.72RR33 pKa = 11.84CQRR36 pKa = 11.84RR37 pKa = 11.84WQRR40 pKa = 11.84PTPRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84LWQSRR51 pKa = 11.84HH52 pKa = 4.56RR53 pKa = 11.84PRR55 pKa = 11.84PKK57 pKa = 9.22RR58 pKa = 11.84WPVGPEE64 pKa = 3.2PGRR67 pKa = 11.84RR68 pKa = 11.84RR69 pKa = 11.84RR70 pKa = 11.84RR71 pKa = 11.84SHH73 pKa = 7.19DD74 pKa = 3.45CLLRR78 pKa = 11.84SPWFRR83 pKa = 11.84LARR86 pKa = 11.84QPPRR90 pKa = 11.84PRR92 pKa = 11.84RR93 pKa = 11.84GG94 pKa = 3.01

Molecular weight: 11.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3776

0

3776

1170282

41

2904

309.9

33.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.297 ± 0.058

0.692 ± 0.011

5.796 ± 0.038

5.752 ± 0.037

3.834 ± 0.026

8.55 ± 0.036

2.028 ± 0.019

5.488 ± 0.027

2.946 ± 0.033

10.36 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.606 ± 0.02

2.801 ± 0.027

5.038 ± 0.03

3.34 ± 0.023

6.492 ± 0.04

5.427 ± 0.029

5.46 ± 0.024

7.502 ± 0.035

1.344 ± 0.013

2.247 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski