Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus; Carboxydothermus hydrogenoformans

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2615 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q3AAL9|Q3AAL9_CARHZ Uncharacterized protein OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=CHY_1996 PE=4 SV=1
MM1 pKa = 8.1DD2 pKa = 6.48DD3 pKa = 2.83IVGRR7 pKa = 11.84VSYY10 pKa = 10.43LQGLAEE16 pKa = 5.01GINLKK21 pKa = 10.55EE22 pKa = 4.02KK23 pKa = 10.46GKK25 pKa = 9.86EE26 pKa = 3.96GEE28 pKa = 4.6IITEE32 pKa = 4.44IIDD35 pKa = 4.63LIADD39 pKa = 3.73LTEE42 pKa = 4.24EE43 pKa = 4.2VRR45 pKa = 11.84SLRR48 pKa = 11.84DD49 pKa = 3.29DD50 pKa = 3.51QEE52 pKa = 4.24RR53 pKa = 11.84LEE55 pKa = 4.63EE56 pKa = 4.06YY57 pKa = 11.02VEE59 pKa = 4.29TVDD62 pKa = 4.71DD63 pKa = 5.15DD64 pKa = 4.98LYY66 pKa = 10.69EE67 pKa = 5.88LEE69 pKa = 4.68DD70 pKa = 3.63AVYY73 pKa = 11.01DD74 pKa = 4.0DD75 pKa = 6.0DD76 pKa = 5.98EE77 pKa = 4.75EE78 pKa = 4.39FTYY81 pKa = 8.33VTCPEE86 pKa = 4.29CGEE89 pKa = 3.77RR90 pKa = 11.84VYY92 pKa = 10.88FEE94 pKa = 5.22RR95 pKa = 11.84EE96 pKa = 3.75LLEE99 pKa = 6.29ADD101 pKa = 3.69DD102 pKa = 5.37NYY104 pKa = 11.01EE105 pKa = 3.96ITCPNCGALVLVSEE119 pKa = 5.34FIEE122 pKa = 4.1NRR124 pKa = 11.84RR125 pKa = 11.84EE126 pKa = 3.75QALNQQNYY134 pKa = 10.42DD135 pKa = 3.65DD136 pKa = 4.79VII138 pKa = 5.67

Molecular weight: 16.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q3A8P8|Q3A8P8_CARHZ DNA gyrase subunit A OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=gyrA PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 9.61QPKK8 pKa = 8.03NRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 9.16RR14 pKa = 11.84VHH16 pKa = 6.3GFLKK20 pKa = 10.47RR21 pKa = 11.84MRR23 pKa = 11.84TPGGRR28 pKa = 11.84NVIKK32 pKa = 10.48RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.22GRR39 pKa = 11.84KK40 pKa = 9.04RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2615

0

2615

720219

28

1407

275.4

30.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.645 ± 0.05

0.899 ± 0.024

4.257 ± 0.031

7.945 ± 0.055

4.585 ± 0.041

7.524 ± 0.044

1.507 ± 0.02

7.488 ± 0.04

7.845 ± 0.043

10.995 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.113 ± 0.02

4.109 ± 0.034

4.192 ± 0.031

2.817 ± 0.027

4.704 ± 0.042

4.579 ± 0.028

4.808 ± 0.034

7.494 ± 0.042

0.851 ± 0.017

3.643 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski